Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0650 TTTGAAGAAGCATTGTCCGGCAGTGCGTATGACGTGAGGGAGAATTCTATTTTTACCGACGTTAATGTTCTGTGTTTGAGTGAACATGACACACCACATGTAGAACAGGGGAAAGAATCTGAAGACGCTATTCAGAAAAAGGATGATGCTACGGTAAGCAATAATGAGGTCCCGGATCACACTGGAATTCCAATGGAGAAAATTCCGTACGTAGGATTGAGATTTGATTCGTTACAGCGGGCACAAGAGTTCTATTCTAATTATGCGAAGAAAGTTGGGTTTGTGACGAGGATTAGGAATACAAACTTTGACAAGACCAGGAAGGAATTAAAGGTAGCAATGCGGGTAAAGAGAATAACAATAGCTGGGTGCAAAGCAAGGATGTACGTGATGCTTGATAGGCATAATGATAATTGGCTGGTGACCAAATTAGAATTGAAGCACACCCACGCGTGTTCTGCCGAGCAAGCTGTGCATTACAGTGAGTACAGGGAACTGACCATGCATGCCAAGTGTAATGTCTTCCCAAATACTAGACACCGATGGTGTGAATTTTGGGCTGGTATGAGAAGTACCCAACGGAGTGAGAGTATGCACGCCTTTTTCGGTGGTTACCTGCATTGTAAAAGTGGACTGGTTCAGTTCGTGCATGAGTATGATAATGTGCTTGGGAACAAAAAGCAAAAAGAACTGGAGGATGATGCTGCAGACTCTAAAGGAGTTCGTGAGTACACAACCTCTAAGTTTAGAGAAGTCCAACATGAATTCAGTAAAAGAGGGGATTGTTTAGTCTGTGGGGTCACTCAAGAAGGTGATTTGTTTCGGGTGACCGTCAACGAGCAATACCTATTGTATGGGGAGCCCAGATCTTGGAAGTACAGTGTTGAGTTTGACTCCAAGACACACAAGATTCGGTGCGAATGCAACATGTTTGGCTCAAGAGGTATTATTTGTTGCCACTGTCTTGCTGTGTTGTTTTATTATGGAGTAGACACAGTACCATCTTGCTATGTTATCCATCAATGGAGCAAGAATGTACAGCGAAAACACACCTTCATCAAGAGCAGCCATGATGAGAAGTCAAAGTTGCTTGACTGTCGTGCGAACTTGCTGTCCAGGCGTGTTCCAAGTCCTTCAAGGGTTTCAACGAAGGGTCGGCCGAGAATGAAGAGGCTTGGATCTGAACTCGACGCCTCAATCAAGAACTCTATGCGAAGAAAAAAGAAGAATCCACCGCTGGATGTTCATCAAGCATTGAATCAAGATGTAGCGAGTTGTTCTGCTAGGAGAGCGAATGAATCACAGGAACATGGCGGGTTCCTGTCGTTGTTAAACTCATTTCGGCCTACTTAA 1353 0.4412 FEEALSGSAYDVRENSIFTDVNVLCLSEHDTPHVEQGKESEDAIQKKDDATVSNNEVPDHTGIPMEKIPYVGLRFDSLQRAQEFYSNYAKKVGFVTRIRNTNFDKTRKELKVAMRVKRITIAGCKARMYVMLDRHNDNWLVTKLELKHTHACSAEQAVHYSEYRELTMHAKCNVFPNTRHRWCEFWAGMRSTQRSESMHAFFGGYLHCKSGLVQFVHEYDNVLGNKKQKELEDDAADSKGVREYTTSKFREVQHEFSKRGDCLVCGVTQEGDLFRVTVNEQYLLYGEPRSWKYSVEFDSKTHKIRCECNMFGSRGIICCHCLAVLFYYGVDTVPSCYVIHQWSKNVQRKHTFIKSSHDEKSKLLDCRANLLSRRVPSPSRVSTKGRPRMKRLGSELDASIKNSMRRKKKNPPLDVHQALNQDVASCSARRANESQEHGGFLSLLNSFRPT* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0650 450 PANTHER OS03G0843700 PROTEIN 177 420 - -
Amo10g0650 450 ProSiteProfiles Zinc finger SWIM-type profile. 293 329 IPR007527 GO:0008270
Amo10g0650 450 Pfam SWIM zinc finger 303 328 IPR007527 GO:0008270
Amo10g0650 450 MobiDBLite consensus disorder prediction 32 54 - -
Amo10g0650 450 MobiDBLite consensus disorder prediction 32 59 - -
Amo10g0650 450 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 161 IPR031052 GO:0006355
Amo10g0650 450 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 177 420 IPR031052 GO:0006355
Amo10g0650 450 PANTHER OS03G0843700 PROTEIN 38 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0650 Amo-Chr10 7971264 7975931 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo10g0650 SWIM 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0650 - K17604 aip:110263722 456.062