Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0644 ATGAAGAGAACTGGAAGCTCATCAGATTCTTTAGGACCTCTCATGACAATTTGTCCATCATCAACAGAGGAGCAGAGTCCGAGGAGCAACCACGTGTACGGGCATGATCCATTGTTCCAGTCGATGGTGCTTGATGGTCTAGACGAAGAAGGGTGCACGGTAGAGGAATCTGGGCACCACTCTGAGAAGAAGCGAAGACTTAGCGTGGAACAAGTGAAAGCGTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTTGAACCAGAGAGGAAGGTGAAGTTAGCACAAGAACTTGGGTTGCAGCCTAGACAGGTGGCGGTTTGGTTCCAGAACCGCCGCGCCAGGTGGAAGACTAAACAGCTTGAGAGAGATTATGGCGTTCTTAAAAATAATTATGATGCTCTTAAAGTTAATCATGATGCACTAAAACAGGACAACGATGCGTTGCACAAGCAGATTAAGGAATTGAAGACAAGGCTCCAAGAAGAGAACACAGCAAACGATGTTTCCGTGAAGGAAGAACAGATAACGATGCCAGAATCGGAAGAGAAATTATTGGTGATGAATGAAGAACACAACACTACTCCTGATGAAACCTCAATTCTTGGATCAGGATCCAACGTTAACGATCATCACTTGTACCATGACAATTGCTTCAACGACAACAGCGACCACGGTGTTGTTGCTCTTGGTGCAACAACAACACCGCCGTCGCCATCACCGTCGTCGCCGCCACTCTTCCCTTCAGACTTCAACAAAGACGGTTCTTCCGATAGCGATTCAAGTGCGATCCTAAACGAAGACACCAAAGACGCAATTTCTTCGTCTGGGGTGCTTCAAAGTAACCACCACTTCCTGATGTTTTCAGAGTCTCCTGCATTGAAATTCAACTGTTCCATGTTGGCCTCTTCGTCTTCCATGAATTGCTTCCAGTTCCAGAAACCGCACCAGACTATGCAATACGTGAAGATGGAAGAGCACAATTTCATCGGTGCCGCTGATGAGGCATGCAATTTGATCTTCTCCGATGAACAAGCACCCACCCTTCATTGGTACTCTTCAGATCAGTGGGGTTAA 1074 0.4665 MKRTGSSSDSLGPLMTICPSSTEEQSPRSNHVYGHDPLFQSMVLDGLDEEGCTVEESGHHSEKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYDALKVNHDALKQDNDALHKQIKELKTRLQEENTANDVSVKEEQITMPESEEKLLVMNEEHNTTPDETSILGSGSNVNDHHLYHDNCFNDNSDHGVVALGATTTPPSPSPSSPPLFPSDFNKDGSSDSDSSAILNEDTKDAISSSGVLQSNHHFLMFSESPALKFNCSMLASSSSMNCFQFQKPHQTMQYVKMEEHNFIGAADEACNLIFSDEQAPTLHWYSSDQWG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0644 357 Gene3D - 57 125 - -
Amo10g0644 357 MobiDBLite consensus disorder prediction 1 35 - -
Amo10g0644 357 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Amo10g0644 357 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Amo10g0644 357 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Amo10g0644 357 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Amo10g0644 357 MobiDBLite consensus disorder prediction 246 262 - -
Amo10g0644 357 CDD homeodomain 63 119 IPR001356 GO:0003677
Amo10g0644 357 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Amo10g0644 357 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 348 IPR045224 GO:0003700
Amo10g0644 357 MobiDBLite consensus disorder prediction 1 28 - -
Amo10g0644 357 SMART HOX_1 61 122 IPR001356 GO:0003677
Amo10g0644 357 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Amo10g0644 357 Coils Coil 117 165 - -
Amo10g0644 357 MobiDBLite consensus disorder prediction 228 262 - -
Amo10g0644 357 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 348 - -
Amo10g0644 357 Pfam Homeobox associated leucine zipper 118 160 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0644 Amo-Chr10 7840179 7843624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0644 1 356 Homeobox Transcription Factor Family AT4G40060 44.652 5.82e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo10g0644 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0644 K09338 - fve:101309384 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1080 20 19787719 19791461 Amo10g0644 10 7840179 7843624 hybridization
Amo13g5148 13 151263379 151265995 Amo10g0644 10 7840179 7843624 PCT