Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0600 ATGCCAGCAATCATATTTGGGAAGGCAATGAAAGATCTTGGGGAGAAAATGAAGGATGCATATGGCATAGCAGGGAGCATAGCGGAACAAGCTATCTTGTCGATTCGAACGGTTTATTCATATGTTGCCGAGAAAGAAACACTAAAGAGGTATAGCTCTGCTCTTGAAAGGAGTATGGAGCTGGGAATAAAGCTAGGGAGAACAAAGGGTGTTGTAGTTGGTAGCTTTGGGTTGCTTTATGCTACTTGGGCATTTCAATCTTGGGTTGGAAGTGTTGTGGTTAGGACTAAAGGTGAAAGAGGTGGACTTGTGTTTGCTGCTCAAATTTGCATGATTTGGGGAGGACTGTCTCTGATGAATGCACTTCCAAATCTAACTTTCATTGTAGAGGCAAAAGTAGCAACAACCAGAATTTTCCAAATGATTGAGCAAATACCAATCATAAACTCACACAAACAAAAAGGAAGGATCTTAAGCCATGTGAGAGGAGAAATCACATTCACAAAAATTGACTTCACTTACCCATCACGACCGGACACACCGATTCTCCAAGGACTGGATCTGAAGTTTCCAGCATGTAAAACAATAGGCCTAGTTGGAGGCAGTGGTTCTGGAAAATCCACAATCATCTCTTTGATTGAAAGRTTCTATGATCCTTTATATGGTGAGATATTGCTTGATGGACATGATATAAAGAGGCTTGAGCTTAAGTGGCTAAGGTCACAAATGGGACTTGTTAATCAGGAGCCTATTCTGTTTGCAACATCAATTAGGGAGAATATTCTGTTTGGCAAGGAAGGTGCTTCAATGGAAGCTGTTATAAATGCAGCTAAGGCTGCAAATGCACATGGTTTCATTGTTAAACTTCCTAGTGGATATGAAACTCAAGTGGGACAACTTGGGACTCAGTTATCTGGAGGACAAAAGCAAAGAATTGCAATAGCAAGGGCCCTAATTCGCAACCCGAAAATCCTACTCCTTGATGAAGCCACAAGTGCATTGGATTCAGAGTCTGAAAGAATAGTGCAAGAGGCCCTTGATTTGGCTTCAAGAGGCAGAACAACAATCATTGTAGCTCATCGCTTATCGACGATTCGAAATGCTGACTCGATAGTAGTCCTTCAATCAGGAAGAGTTGTTGAATCTGGCTCCCATGTTGAGCTACTCAAACTTAACAATGGACAAGGGGGTGCTTATAGCAAAATGCTAAAACTACAACAAACAAATCAAAATGAAGATTCAACATTGAATGATGTGAGCAAGAGTCCCCAAGTTATGTCATATTTAACAAGTCCAAGATCAATGCCAGGTACTCCAACTCATCATTCATTCACCTCACCGACACCAATATACTCAATCAGTGTTCTGGGGTCCCCTTTTGATGACTACACTGAGAATTCTGAGATTTCTTCAAAAGCAAGTTTCTCGCAATGGCGTTTGATAAGAATGAATTCCCCTGAGTGGAAGTATGCTCTGATAGGATGCTTAGGTGCTATTGGCTCTGGAATTTGCCTAATTCAGCACTCGAGCTTCGCCATCATGGGCGAGAAATTGCTAAARAGGGTGCGCGAGAATCTGCTAGAGAAAATCCTTACATTTGAAATAGGATGGTTTGATCAAGAAGATAACAGCAGTGCAGCCATCTGCGCTCGTTTGGCGTTSGATGCAAACTTGGTCAGGTCTCTTGTAGCAGAAAGAATGTCATTACTAGTTCAAGTATTTGTCACTGCCACCCTGGCTTTCGCACTCGGTTTATATGTCTCATGGAAGGTGGCAATGGTAATGATAGCTATGCAGCCCTTGATCATTGCTTGTTTCTATTCCAAATTCATGCTTATGAAAAGTATGTCAGGTAAAGCAAGAAAGGCTCAAAGTGAAGGTAGTCAATTAGCAATGGAAGCTACCATTAACCATAGAACTATTGCTGCATTTTCATCAGAGAAAAGGGTATTGAATTTGTTCAAAAATTCAATGAAAGGACCTCATTTGGAAACCGTAAAGCAATCATGGATTTCAGCTGCAATTTTGTCRTTGTCACAGTTCATAACTACAGCTTCTATAACCTTAACATTTTGGTATGGAGGATTGCTACTAAACAAAAAGATGGTGAATTCAAATGACCTTTTGCAAGTTTTCTTAATACTGATGGGAACTGGAAGACAAATTGCTGAGACAGTAAGCATGACTTCGGACATAGCGAAAAGCGGGAAAGCCGTTAGCTCGATTTTTGCAATTTTGGACAGGAAAACTCAGATTGAACCTGAAGATCTTAGGCTTATGAAGTTCAGAAAGAACAACAACATAAAGGGTCATGTGAAGTTAAAAGATGTGTTCTTTTCATACCCATCAAGGCCAGAACAAATGATCCTAAAGGGTCTTAGTCTTGAAATTGAAGCTGGGAAAACAATTGCATTGGTGGGRCAAAGTGGGTCAGGGAAATCCACTATCATTGGACTAATTGAAAGATTTTATGACCCAATTAATGGATCAATATTTATSGATGGTTGTGACATTAGGGAATTTGATTTGAGAAGTTTGAGGTTACATATTGCATTGGTGAGTCAAGAGCCTACACTCTTTGGTGGAACTATACGTGATAACATTGTGTATGGAAAGATTGATGCATCTGAAGATGAAATAAGAAAGGCAGTGCGTCTTGCAAATGCTCATGAGTTTATAAGTTCAATGAGAGATGGATATGACACATACTGTGGAGAAAGAGGAGTGCAGCTTTCAGGGGGACAAAAGCAAAGAATTGCAATTGCCAGAGCAATACTAAAGAACCCATCAATCCTTCTCATGGACGAAGCAACAAGTGCTCTCGACAGCGTTTCAGAGAATCTAGTGCAAGATTCCCTGGAGAAAATGATGGTTGGAAGAACATGTGTGGTTATTGCTCATCGTTTGTCTACAATTCAGAATGTGGACACCATTGCTGTGATCAAGAATGGGAAATTGGTGGAGCAAGGTTCACACTCCGAGTTAATGAATGTTGGAACAAAGGGTGCTTACTACTCCATGATTAGGTTACAACATGGGACTAACTCTACTAGCTGA 3057 0.405 MPAIIFGKAMKDLGEKMKDAYGIAGSIAEQAILSIRTVYSYVAEKETLKRYSSALERSMELGIKLGRTKGVVVGSFGLLYATWAFQSWVGSVVVRTKGERGGLVFAAQICMIWGGLSLMNALPNLTFIVEAKVATTRIFQMIEQIPIINSHKQKGRILSHVRGEITFTKIDFTYPSRPDTPILQGLDLKFPACKTIGLVGGSGSGKSTIISLIERFYDPLYGEILLDGHDIKRLELKWLRSQMGLVNQEPILFATSIRENILFGKEGASMEAVINAAKAANAHGFIVKLPSGYETQVGQLGTQLSGGQKQRIAIARALIRNPKILLLDEATSALDSESERIVQEALDLASRGRTTIIVAHRLSTIRNADSIVVLQSGRVVESGSHVELLKLNNGQGGAYSKMLKLQQTNQNEDSTLNDVSKSPQVMSYLTSPRSMPGTPTHHSFTSPTPIYSISVLGSPFDDYTENSEISSKASFSQWRLIRMNSPEWKYALIGCLGAIGSGICLIQHSSFAIMGEKLLKRVRENLLEKILTFEIGWFDQEDNSSAAICARLAXDANLVRSLVAERMSLLVQVFVTATLAFALGLYVSWKVAMVMIAMQPLIIACFYSKFMLMKSMSGKARKAQSEGSQLAMEATINHRTIAAFSSEKRVLNLFKNSMKGPHLETVKQSWISAAILSLSQFITTASITLTFWYGGLLLNKKMVNSNDLLQVFLILMGTGRQIAETVSMTSDIAKSGKAVSSIFAILDRKTQIEPEDLRLMKFRKNNNIKGHVKLKDVFFSYPSRPEQMILKGLSLEIEAGKTIALVGQSGSGKSTIIGLIERFYDPINGSIFXDGCDIREFDLRSLRLHIALVSQEPTLFGGTIRDNIVYGKIDASEDEIRKAVRLANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAILKNPSILLMDEATSALDSVSENLVQDSLEKMMVGRTCVVIAHRLSTIQNVDTIAVIKNGKLVEQGSHSELMNVGTKGAYYSMIRLQHGTNSTS* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0600 1018 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 772 1008 IPR003439 GO:0005524
Amo10g0600 1018 SUPERFAMILY ABC transporter transmembrane region 3 144 IPR036640 GO:0005524|GO:0016021
Amo10g0600 1018 CDD ABC_MTABC3_MDL1_MDL2 165 406 - -
Amo10g0600 1018 Pfam ABC transporter 790 939 IPR003439 GO:0005524
Amo10g0600 1018 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 401 IPR003439 GO:0005524
Amo10g0600 1018 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 505 1013 IPR039421 -
Amo10g0600 1018 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 130 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g0600 1018 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 504 IPR039421 -
Amo10g0600 1018 SUPERFAMILY ABC transporter transmembrane region 490 753 IPR036640 GO:0005524|GO:0016021
Amo10g0600 1018 ProSitePatterns ABC transporters family signature. 911 925 IPR017871 GO:0005524
Amo10g0600 1018 Gene3D ABC transporter type 1, transmembrane domain 460 757 IPR036640 GO:0005524|GO:0016021
Amo10g0600 1018 Pfam ABC transporter transmembrane region 4 96 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g0600 1018 Pfam ABC transporter transmembrane region 490 715 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g0600 1018 CDD ABC_6TM_Pgp_ABCB1_D2_like 481 752 - -
Amo10g0600 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1011 IPR027417 -
Amo10g0600 1018 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 491 734 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g0600 1018 ProSitePatterns ABC transporters family signature. 304 318 IPR017871 GO:0005524
Amo10g0600 1018 PANTHER OS04G0481700 PROTEIN 1 504 - -
Amo10g0600 1018 Gene3D ABC transporter type 1, transmembrane domain 1 144 IPR036640 GO:0005524|GO:0016021
Amo10g0600 1018 SMART AAA_5 192 378 IPR003593 -
Amo10g0600 1018 SMART AAA_5 799 985 IPR003593 -
Amo10g0600 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 406 IPR027417 -
Amo10g0600 1018 PANTHER OS04G0481700 PROTEIN 505 1013 - -
Amo10g0600 1018 Gene3D - 758 1016 IPR027417 -
Amo10g0600 1018 Pfam ABC transporter 183 332 IPR003439 GO:0005524
Amo10g0600 1018 Gene3D - 156 417 IPR027417 -
Amo10g0600 1018 CDD ABC_MTABC3_MDL1_MDL2 772 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0600 Amo-Chr10 6815292 6819864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0600 515 1018 Calmodulin-binding Proteins AT2G36910 39.881 3.81e-110 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0600 K05658 - gmx:100804664 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1018 20 18107023 18111699 Amo10g0600 10 6815292 6819864 hybridization