Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0596 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGCAGACGCTCGGGTGTATTATATCAGACATGATTGGGTGTTTTCTGACACGGTGTATTGTGCAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAAGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGACCGGTATCAGACCAAGCAAAACATACCAATCATTTGTTGCGGCTGCCGGGGACCGTCACATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTATATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTACAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCACCTAGATACATACTGGAATGA 1071 0.4454 MDHSTSDCQLNPGEVDYEFESNEVPEQTLGCIISDMIGCFLTRCIVQPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEETGIRPSKTYQSFVAAAGDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITRNSSLIQFVKQYDNCLGSREQAERESDATDFHTVIPCATKSSIEAQEVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILE* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0596 356 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 188 356 IPR031052 GO:0006355
Amo10g0596 356 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 164 IPR031052 GO:0006355
Amo10g0596 356 Pfam SWIM zinc finger 311 342 IPR007527 GO:0008270
Amo10g0596 356 SMART 26again6 320 347 IPR006564 GO:0008270
Amo10g0596 356 ProSiteProfiles Zinc finger SWIM-type profile. 309 345 IPR007527 GO:0008270
Amo10g0596 356 PANTHER OS03G0843700 PROTEIN 188 356 - -
Amo10g0596 356 PANTHER OS03G0843700 PROTEIN 53 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0596 Amo-Chr10 6768105 6770566 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo10g0596 SWIM 9.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0596 - - adu:107480989 331.257