Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0594 ATGGCATGGAGGGAGCTTGGAAGAAAGAGAATTTATATGAATACTTTTAGAACTTTGAATACATCATCATTTAGGCGTGTTGTAGGATCAAGCTATGGATCTACATATACTACACAGTTTGTTTATGCATCAGCAAGATGCATGCCAGACCTCATCAGCCACTCATCTATAGGAGTGGATGGTTTGTTCAGTGGGACAAAAGAAGGTGGTATACGGTGCTTCCATGCTAGTCCTGCAGTCTGGGCAAGAAGAGGTGATGAGCCATTTGGGTTAAAGACCCCAAAGAAGGAGAAGTACATAAGAAGGGAAGGTAGAAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTCAAAGCACCAAAATCTAATTCTGATAAAACAGTAGAAATCTTTGAAGGCATGACCCTTGATGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATACTCACAAATGTTGGTGAAAAGTTAGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGTAGAGCTTGCTGCAATGGAGGTTGGGGTCAATGTGAAGAGGTTACATTCGGCCGAGGGTACTGAAATCGTACCTCGTCCTCCGGTTGTAACTGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGTCATGCCATCTGGAGCATCAATCACGTTTCTTGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGCGCAGCAGTCACGGATATAGTAGTGCTAGTTGTTGCCGCAGATGACGGAGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAAAGTACCAATTATAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAAAGTGAAACTGCAGCTTGCTTCGGAGGGCTTACTGCTGGAGGAGATGGGTGGTGATGTTCAGGTCATTGAAGTTTCAGCACTTCAAAAATCTGGATTGGATAACCTAGAGGAAGCTTTACTTCTTCAGGCTGAAATGATGGATCTGAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGACGCGGTCCATTGATAACTACCATAGTAAAGGCAGGAACCTTAACTTGTGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGCAGGAAGGTTAACTGAACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGCTTGCCAATGTCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTGAGTTCTGGTAGGACAAGGAAGTCCGAGGAGAATAGACTTAGGAGGAAATTGAATGAGGACATCCCATCTACTTTGGAATCATCTGAGGAGGTTCCACAGAGGGTTGAGATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTTACTGATGCATTAAGAACTTTAAATAGTTCCCAGGTTCTTGTGAATGTTGTTCATGTTGGTGTTGGCCCTATTTCTCAATCTGATGTGGACTTGGCACAAGCTTGTGATGCGTGCATAGTTGGATTCAATATCAAGAGTCCACCAATTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGGTGATTCTGCACCGTGTTATTTACCACCTTCTGGAGGACATAGGAAATTTGATAATAGAGAAGGCGCCGGGTACTTTTGAGACCCAGGTAGCTGGTCAGGCAGAGGTGCTGAACATCTTTGAGGTGAAGGGCAGCAAAACAAAGGGACCTGATGTTAAGATTGCCGGGTGTCGGGTCGTAGAAGGTTTTGTGGCAAGGACGGGAACCATGAGGCTTCTGAGGAGTGGGGAAGTTGTGTTTGAAGGACTTTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGACAGTGTGAAGAAGGGTAATGAGTGTGGATTAGTGATCAATGATTGGTATGATTTCAAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTTGTGAGGAAGCCCAAGTTCATAAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2163 0.4535 MAWRELGRKRIYMNTFRTLNTSSFRRVVGSSYGSTYTTQFVYASARCMPDLISHSSIGVDGLFSGTKEGGIRCFHASPAVWARRGDEPFGLKTPKKEKYIRREGRNQPPVEARYVPRNVKAPKSNSDKTVEIFEGMTLDELAKRTGKSVSSLQDILTNVGEKLESEFEPLSMDIVELAAMEVGVNVKRLHSAEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAAKVPIIVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVIEVSALQKSGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMAGRLTERATPAMPVEIEGLRGLPMSGDDVIVVHSEERARMLSSGRTRKSEENRLRRKLNEDIPSTLESSEEVPQRVEMPVIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACDACIVGFNIKSPPIALSQAATRASIKVILHRVIYHLLEDIGNLIIEKAPGTFETQVAGQAEVLNIFEVKGSKTKGPDVKIAGCRVVEGFVARTGTMRLLRSGEVVFEGLCASLKREKQDVDSVKKGNECGLVINDWYDFKIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0594 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo10g0594 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 73 711 IPR015760 -
Amo10g0594 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 496 609 IPR036925 -
Amo10g0594 720 Gene3D - 196 371 IPR027417 -
Amo10g0594 720 Gene3D Translation factors 603 705 - -
Amo10g0594 720 SUPERFAMILY Translation proteins 373 455 IPR009000 -
Amo10g0594 720 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 73 711 - -
Amo10g0594 720 Pfam Translation-initiation factor 2 487 591 IPR023115 -
Amo10g0594 720 Gene3D Translation factors 372 486 - -
Amo10g0594 720 CDD IF2_eIF5B 202 366 - -
Amo10g0594 720 Pfam Elongation factor Tu GTP binding domain 204 360 IPR000795 GO:0003924|GO:0005525
Amo10g0594 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Amo10g0594 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 199 369 IPR000795 GO:0003924|GO:0005525
Amo10g0594 720 TIGRFAM IF-2: translation initiation factor IF-2 127 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo10g0594 720 Gene3D - 497 601 IPR036925 -
Amo10g0594 720 CDD IF2_mtIF2_II 375 468 IPR044145 -
Amo10g0594 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 390 IPR027417 -
Amo10g0594 720 TIGRFAM small_GTP: small GTP-binding protein domain 202 355 IPR005225 GO:0005525
Amo10g0594 720 CDD mtIF2_IVc 609 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0594 Amo-Chr10 6732742 6739169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0594 190 684 Eukaryotic Initiation Factors Gene Family AT1G76810 27.305 4.05e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0594 K02519 - gmx:100781314 1130.93