Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0576 ATGGCAGATTGGTTTCTTCTTATGTTCCAGTTCTTGCTTCTTAGCCCAGCTTTAACATCTTCTTCTCCATCAGTTCAAGATCCTGAATCCGTTGTGCAGGAACTACACAAGATCACCAATAATTCCAGGAGAAATTTGGCATACTTTTCTTGCGGTACAGGTAACCCAATCGACGATTGTTGGAGGTGTGACCCCAATTGGGAAAGAAACCGGAAGCGCCTCGCCGACTGCGCCATTGGCTTCGGGAGGCGCGCAATTGGAGGTAGGGATGGAAAATATTACGTGGTCACTAATCCTAGTGACCACGCAATGGACCCCAAGCCGGGTACCCTAAGACATGCTGTGATCCAAGAAGAGCCCTTATGGATAATCTTCAAGCATGACATGTTTATAAAACTAAAAATGGACCTAATTGTAAATTCTCACAAAACAATTGATGGCAGAGGAGCAAATATTCACATTGGTAGAGGACCCTGCATTGAAATAAGGAATAAGTCCAACATCATAATTCATGGCATACATATCCATGATTGTGTGAGAGGTGGTAGTGGCTATGTTAGGGACTCAAATAGTCATTTCTTTTGGAGATCAAGATCTGATGGAGATGGGGTTTTGATACATGGGAGTAGTTTTGTTTGGGTGGACCATTGCTCATTTTCAAATTGCTATGATGGGCTTATTGATGTTGTTCATGGGTCAACGGGTGTTACAATTTCAAATAATTATATGACACACCATAATAAAGTTATGCTTTTAGGACATAGTGATTCCAATGAAGAAGAGGACAAGAATATGCAAGTAACTGTGGCATTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCAAGGTGCAGGTTTGGGTACTTTCATGTGGTGAATAATTATTATACCCATTGGCAACAGTATGCAATAGGAGGAAGTTCCTCCCCAACTATTTTTAGCCAAGGGAACAGATTTGTTGCTCCTCATGACGTTGATCACAAAGAGGTTACGAAACACTTTGGTTCATCAAAAGATGAGTGGAAGAGATGGAATTGGAGATCTGAAGGGGATTTAATGTTGAATGGTGCCTTCTTCACAGAATCTGGAGATGGAGCACCTTTCTTGTATGAGAAGGCATCAAGCATGGAAGGAAGACCAGCCATGTTAGTGACTTTAATGACAGCAGGAGCTGGAGCACTTGCTTGCAAAAATGGACAACTCTGCTAG 1212 0.4224 MADWFLLMFQFLLLSPALTSSSPSVQDPESVVQELHKITNNSRRNLAYFSCGTGNPIDDCWRCDPNWERNRKRLADCAIGFGRRAIGGRDGKYYVVTNPSDHAMDPKPGTLRHAVIQEEPLWIIFKHDMFIKLKMDLIVNSHKTIDGRGANIHIGRGPCIEIRNKSNIIIHGIHIHDCVRGGSGYVRDSNSHFFWRSRSDGDGVLIHGSSFVWVDHCSFSNCYDGLIDVVHGSTGVTISNNYMTHHNKVMLLGHSDSNEEEDKNMQVTVAFNHFGEGLGGRMPRCRFGYFHVVNNYYTHWQQYAIGGSSSPTIFSQGNRFVAPHDVDHKEVTKHFGSSKDEWKRWNWRSEGDLMLNGAFFTESGDGAPFLYEKASSMEGRPAMLVTLMTAGAGALACKNGQLC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0576 403 SMART amb_all 128 326 IPR002022 -
Amo10g0576 403 PANTHER PECTATE LYASE 3 399 - -
Amo10g0576 403 Gene3D - 54 396 IPR012334 -
Amo10g0576 403 Pfam Pectate lyase 136 320 IPR002022 -
Amo10g0576 403 PANTHER PECTATE LYASE 18-RELATED 3 399 IPR045032 GO:0030570
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Amo10g0576 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Amo10g0576 403 SUPERFAMILY Pectin lyase-like 37 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0576 Amo-Chr10 6413879 6420375 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0576 5 403 Polysaccharide Lyase AT5G63180 66.337 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0576 K01728 - gmx:100801136 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1002 20 17634772 17644348 Amo10g0576 10 6413879 6420375 hybridization