Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0479 ATGATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCAATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGGTTGAGAAAATTGTGGATGAACTTGCAAGTACGGTTTTTGCAATTGAGCCCTCAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAAGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAGTTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTRTTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCMGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCRGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGCGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCYWAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCRATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGYGAAAGTGGTTCCAGTAGAAGAGAGCAGYATGTCAGAGCAAACYGGGGTAGCTGGAGCTGAAAGYGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAAYGACTTACAGGGGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCYAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCATGAAGGAAATGCAATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTATAAACCTACTTGCTATGGCTGTGCAACTGCCCTCTATCTAAATCTCTCTTGCCTTGAAGAAGTCAAGCCTATGATTGGTTCGGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACSCTCTATAATCTTTCTACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTRTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAACTGGGTAGAGAGGAAATGGTGTCATCTCCAGCAATCATAAGCACATTGGCRTCGATACTYGACACTGGTGAGCTCYTAGAGCAAGAGCAAGCCGTCGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCCTTGGTCTCAATATCGGTAAATGGGACGTCAAGAGGCAGAGAAAAATCTCAAAAGCTGTTGATGCTCTTCCGAGAGCAACGACAAGAAGAGCATTCCCTGACCAAGCCACAACGCCGACCAGAAACCAGCAATTCATCTATGCCTAAGCCTGAGATGAAACCACTATGCAAGTCTACATCTAGGAGAAAGGTGGGGAAGGCTTTAGGCTTTCTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAG 2286 0.4208 MMDVAELEENLFAASDAKLHGEMCRTLSAIYCKILTIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQVEKIVDELASTVFAIEPSEKQVGDDLIALLQQGKKLDNSNDSSELECFHQAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGXMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPXSLDFNYWRLALSDTXSTNSKSVNSVNSCKLKGXKVVPVEESSMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDLQGKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALHEGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEVKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSXWTEKCIAVLINLAVSQLGREEMVSSPAIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQEEHSLTKPQRRPETSNSSMPKPEMKPLCKSTSRRKVGKALGFLWKSKSYSVYQC* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0479 761 SMART arm_5 452 496 IPR000225 GO:0005515
Amo10g0479 761 SMART arm_5 536 578 IPR000225 GO:0005515
Amo10g0479 761 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Amo10g0479 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Amo10g0479 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 752 - -
Amo10g0479 761 PANTHER U BOX DOMAIN-CONTAINING 2 752 - -
Amo10g0479 761 Gene3D - 398 714 IPR011989 -
Amo10g0479 761 MobiDBLite consensus disorder prediction 709 737 - -
Amo10g0479 761 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Amo10g0479 761 SUPERFAMILY ARM repeat 424 704 IPR016024 -
Amo10g0479 761 Coils Coil 176 196 - -
Amo10g0479 761 SUPERFAMILY RING/U-box 274 352 - -
Amo10g0479 761 CDD RING-Ubox_PUB 281 323 IPR045210 -
Amo10g0479 761 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Amo10g0479 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0479 Amo-Chr10 4812468 4816902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0479 2 760 U-box Gene Family AT1G24330 65.290 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0479 - - adu:107478647 1284.63