Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0462 ATGGAGAGGAACAACTTGAGTAGTTCATATGATCCTCATCACATAGTGAAGGAGTGTGAGAAGAAGAAGAATGATCATGATCATTTGGGAGGTTCATCAAGGAACATGTCTTTCAATCTGAGGAATGTTTCAAAGCTCATTCTTCCACCACTTGGAGTTTCTTCCAACAATCAGAACCATGTTGAATCAAGAGCTTGGATCATATCACCAATGGATTCAAGATACAGGTGTTGGGAGAGTTTTATGGTTGTTCTGGTAGCATACTCTGCATGGGTGTATCCATTTGAAGTAGCATTCATGCACTCATCTCCAGAATACAGGAGAATCTACATTGTTGACACTGTTGTTGACCTTTTCTTTGCCGTTGACATTGTGTTGACCTTCTTCTTGGCTTACATAGATCGAACTACTCATCTATTAGTTCAGGACTCCAGAAAGATTGCATTCAGGTACTTGTCAACATGGTTGGTAATGGATGTGGCATCAACGATCCCTTACGAGGCACTCTCTTGCTTGTTTACCGGCAAACACTATGTCTCCCTCCCTTACTACCTCCTTGGCCTCCTCCGCTTTTGGCGTCTCCGCCGTGTCAAACAATTCTTCACAAGGCTTGAGAAAGACATAAGGTTCAGCTATTTCTGGATCCGATGTGCTAGACTTCTCTCTGTAACAGTATTTTCAGTTCATTGTGGTGGGTGCTTGTATTACATGCTGGCTGATAGGTACCCTCATAAAGGGAAGACATGGATTGGAGCAGTAAATCCAAACTTCAGAGAGACAAGCCTTTGGATCAGATACATCTCTGCCATGTATTGGTCTATCACCACCATGTCCACCGTTGGCTATGGCGACCTCCACGCTGTTAACACTGTCGAAATGATCTTCATCATTTTCTACATGCTCTTCAACCTCGGCCTAACTGCTTACTTGATTGGTAACATGACTAACCTTGTTGTCGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAATCAGCATCAAACTTTGTGTCCCGAAATCGATTGCCTCCCAGGTTAAAGGAGCAGATCCTGGCTTACATGTGTTTGAGATTCAAAGCTGAGAGTTTGAATCAGCATCACCTCATTGAGCAACTACCAAAATCAATTTGCCAGAGCATCTGCCAGCATTTGTTCTATGAAACTGCAGCAAAAGCTTATCTTTTCAAAGGTGTCTCAAAAGAAATTCTCTTGTCCTTGGTTGCGAAAATGAAGGCAGAGTACCTGCCTCCTAGAGAGGATGTTATTATGCAAAACGAAGCGCCGGATGATGTTTACATCATAGTTTCTGGGGAAGTAGAGTTCATTGATTGTGTAATGGAGAAAGAGAGAGTCTTGGGGACTCTACAAACAGGGGACATGTTTGGAGAAGTTGGTGCACTTTGCTGCAGACCTCAGAGCTTTACCTTTAGAACAAAGACTCTCACACAGCTTCTAAGGCTGAAAACTAGTACACTGATTGAAACAATGCAGGTTAAGAAAGAAGACAATATACAAATACTCAAGAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATCTTAGTATCAGAGATTTAATGGTGGAGAGTGTGGAAGAAGAGGATCCTGACATGGCTGTGAACTTGTTGACTGTGGCCACCACAGGCAATGCTGTTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGACATTGGAGACTCAGAAGGGAAAACCCCATTGCACATAGCAGCATCAAATGGGCATGAAGATTGTGTTAAAGTTTTACTTAAGCATGCATGTAACTTACATTTGAGAGATATCAATGGTAACACAGCACTATGGGATGCTATAGCATCAAAGCATTACTCCATATTCAGAATCCTCTACCAGCTTGCTGCTCTCTCCGATCCACACACACCGGGTGATCTCTTATGCACAGCAGCAAAAAGAAATGATTTAGTAGTGATGAAGGAGCTCTTAAAGCTAGGATTGAACATTAACTCCAATGATCACCAAGGAATGTCAGCAATCCAAATTGCCATGCAAGAAAACCATGTGGACATGGTTGAATTGCTTGTCATGAATGGAGCAGATGCCAATGGTGTATGTACTAATGGATTTTCTGCATTAGCCTTAAATGAAATGCTGCGAAAGCGCGAAGTTGGTCATCGAATCAATGTGAATGAGGCCATACCATGTGATTTTGTGTCAGAAGGGAAACACCAAGAAGATCAAAAGAAGAATAAGGGAAGTTCAAATGGATTCAACTGCCCAAGAATAAGCATATATAGAGGTCACCCTATACAGAGAAGAGGAAAAGGTTCCATGGAACCTGGGAAGTTAATAAGGTTACCTGATTCATTAGAGGATCTCAAAACTATTGCAGGTAAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTAACTGATGAACAAGGAGCTGAGATAGACTGTATTGATGTCATCAGAGATAATGATAAGATTTTTGTTGTTTTATAG 2487 0.4162 MERNNLSSSYDPHHIVKECEKKKNDHDHLGGSSRNMSFNLRNVSKLILPPLGVSSNNQNHVESRAWIISPMDSRYRCWESFMVVLVAYSAWVYPFEVAFMHSSPEYRRIYIVDTVVDLFFAVDIVLTFFLAYIDRTTHLLVQDSRKIAFRYLSTWLVMDVASTIPYEALSCLFTGKHYVSLPYYLLGLLRFWRLRRVKQFFTRLEKDIRFSYFWIRCARLLSVTVFSVHCGGCLYYMLADRYPHKGKTWIGAVNPNFRETSLWIRYISAMYWSITTMSTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIESASNFVSRNRLPPRLKEQILAYMCLRFKAESLNQHHLIEQLPKSICQSICQHLFYETAAKAYLFKGVSKEILLSLVAKMKAEYLPPREDVIMQNEAPDDVYIIVSGEVEFIDCVMEKERVLGTLQTGDMFGEVGALCCRPQSFTFRTKTLTQLLRLKTSTLIETMQVKKEDNIQILKNFLQHFKQLKDLSIRDLMVESVEEEDPDMAVNLLTVATTGNAVFLEELLRAGLDPDIGDSEGKTPLHIAASNGHEDCVKVLLKHACNLHLRDINGNTALWDAIASKHYSIFRILYQLAALSDPHTPGDLLCTAAKRNDLVVMKELLKLGLNINSNDHQGMSAIQIAMQENHVDMVELLVMNGADANGVCTNGFSALALNEMLRKREVGHRINVNEAIPCDFVSEGKHQEDQKKNKGSSNGFNCPRISIYRGHPIQRRGKGSMEPGKLIRLPDSLEDLKTIAGKKFGFDAKDAMVTDEQGAEIDCIDVIRDNDKIFVVL* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0462 828 ProSiteProfiles KHA domain profile. 755 828 IPR021789 -
Amo10g0462 828 Pfam Ion transport protein 76 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo10g0462 828 Pfam Ankyrin repeats (many copies) 639 689 IPR002110 GO:0005515
Amo10g0462 828 SUPERFAMILY Voltage-gated potassium channels 70 319 - -
Amo10g0462 828 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Amo10g0462 828 Pfam Ankyrin repeats (3 copies) 550 626 IPR002110 GO:0005515
Amo10g0462 828 SUPERFAMILY cAMP-binding domain-like 323 515 IPR018490 -
Amo10g0462 828 SUPERFAMILY Ankyrin repeat 504 708 IPR036770 -
Amo10g0462 828 SMART ANK_2a 668 697 IPR002110 GO:0005515
Amo10g0462 828 SMART ANK_2a 571 600 IPR002110 GO:0005515
Amo10g0462 828 SMART ANK_2a 604 635 IPR002110 GO:0005515
Amo10g0462 828 SMART ANK_2a 538 567 IPR002110 GO:0005515
Amo10g0462 828 SMART ANK_2a 639 664 IPR002110 GO:0005515
Amo10g0462 828 Gene3D - 76 319 - -
Amo10g0462 828 Gene3D Jelly Rolls 363 537 IPR014710 -
Amo10g0462 828 PRINTS Ankyrin repeat signature 572 587 IPR002110 GO:0005515
Amo10g0462 828 PRINTS Ankyrin repeat signature 684 698 IPR002110 GO:0005515
Amo10g0462 828 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo10g0462 828 PRINTS EAG/ELK/ERG potassium channel family signature 292 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo10g0462 828 PRINTS EAG/ELK/ERG potassium channel family signature 310 319 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo10g0462 828 PRINTS EAG/ELK/ERG potassium channel family signature 266 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo10g0462 828 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo10g0462 828 SMART cnmp_10 396 513 IPR000595 -
Amo10g0462 828 PANTHER POTASSIUM CHANNEL AKT1 19 827 IPR045319 GO:0005249|GO:0006813
Amo10g0462 828 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Amo10g0462 828 Pfam Cyclic nucleotide-binding domain 416 499 IPR000595 -
Amo10g0462 828 ProSiteProfiles Ankyrin repeat profile. 668 696 IPR002110 GO:0005515
Amo10g0462 828 Gene3D - 540 719 IPR036770 -
Amo10g0462 828 ProSiteProfiles cAMP/cGMP binding motif profile. 396 515 IPR000595 -
Amo10g0462 828 ProSiteProfiles Ankyrin repeat region circular profile. 668 696 - -
Amo10g0462 828 Pfam KHA, dimerisation domain of potassium ion channel 755 826 IPR021789 -
Amo10g0462 828 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 19 827 - -
Amo10g0462 828 CDD CAP_ED 396 509 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0462 Amo-Chr10 4597395 4603958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0462 21 576 Ion Channels AT4G22200 71.809 0.0 837