Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0458 ATGCCGAATGGAAACCTTGAAGACCATCTGTTTCTGGTGAGTGAGCAGCAAAAGTTGAAGAAATCGCTGACTTGGCCTCAAAGGAAGAGCATAATCTTGGATGTGGCAAAGGGGCTGGCTTATCTTCACTATGGAGTCAAGCCTGCAATTTTTCATAGGGATATAAAAGCAACCAACATATTACTTGATGAAGACATGAGAGCCAGAGTTGCGGATTTCGGGCTTGCTAAACAAAGCAGGGAAGGCCAATCTCATCTCACTACAAGAGTAGCTGGAACTCATGGATATCTAGCTCCGGAATATGCTCTTTACGGTCAGCTTACAGAGAAAAGTGATGTGTATAGTTTTGGGGTTGTTGTTTTGGAGATAATGTGTGGGAGGAGAGCCCTTGACTTGTCTTCAGCAGGATCGCTAAAGGCATTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAATCAGGGAACATAGAAGAGGCATTGGATGCTTCTTTGTTGAAGGATGACAGCTTTGGAAGTTCAAATCCAAAGAGCATAATGGAAAGGTTTTTACTTGTGGGAATTCTATGCTCACATGTGATGGTTGCTCTGAGGCCAACAATTTCTGATGCATTGAAGATGCTGGAAGGTGATATTGAGGTTCCTCAAATCCCGGATCGGCCAATGCCGCTCGGACACCCTGCTACGTTTTACGGCGATGGCTGCAGCACTTTCAGCATATCTCCGGCCTTAAGCGGCCCCAAGTTGCAAACTGGAGACATGCTCAGGTAA 768 0.4583 MPNGNLEDHLFLVSEQQKLKKSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRRALDLSSAGSLKAFLITDWAWSLVKSGNIEEALDASLLKDDSFGSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPATFYGDGCSTFSISPALSGPKLQTGDMLR* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0458 255 Pfam Protein kinase domain 19 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0458 255 SMART serkin_6 5 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0458 255 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0458 255 Gene3D Transferase(Phosphotransferase) domain 1 1 215 - -
Amo10g0458 255 SUPERFAMILY Protein kinase-like (PK-like) 1 208 IPR011009 -
Amo10g0458 255 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 254 - -
Amo10g0458 255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Amo10g0458 255 PANTHER OS01G0253100 PROTEIN 1 254 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0458 Amo-Chr10 4566832 4567599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0458 1 255 Receptor kinase-like Gene Family AT1G11050 78.039 1.52e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Amo10g0458 Pkinase 4.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0458 - - gmx:100806560 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0824 20 12665683 12668414 Amo10g0458 10 4566832 4567599 hybridization