Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0416 ATGGCGGAGGATGAAGTTCAGATTCAAGAAAACGAGGAGTCATCCCGACCCGAATTCCCGACGAGTCGGGTGAAGAAAATAATGAGACTAGACAAGGATGTGAATAGGGTGAGCGGAGAAGCGCTGTTCCTGGTGTCGCGCTCCACCGAGTTGTTTCTTCACTTCCTGGCTCAGAAATCGGCGCGCGTGGCCATCGAGAAGAAGCGCAAAACGGTTACCCTTGACCACCTTCGGGTCGCCGTCAAGAGGCACCAACCTAGCAGCGATTTCCTCCTCGACTCGCTCCCTCTGCCTTCTGAGCCCAAAAATCTCCCTCCTTCCACCATCGCCGACCGGAGAAAAGCTGATAAGCCCGCACCTGCCGGCACGCGTCGCATCGATCAGTTCTTCCGGAAGCCTGAAGTCCAAGTTGCTCCCGCGGCAGATCCTGAAGCCGAAGCTCCTGCGGAAGCTGATGCTGAAGCTAAAGATGCTCCCGAAGCTGATTCTGAAGCCCAAGCTGCTCCTGTGGAAGATCCTGAAGCCGAGCCTTCTGCGGAAGCTGATGCTGAAGCTAAAGCTGCTCCCGAAGCTGATTCTGAGGCCCAAGCTACTGGAGCTGAAGCTGACGCCGGAGCTGAAGTTGCTGCCGAAGCTGAAGCGGCAGTTCACGTAGATGAGTGTTAG 666 0.5616 MAEDEVQIQENEESSRPEFPTSRVKKIMRLDKDVNRVSGEALFLVSRSTELFLHFLAQKSARVAIEKKRKTVTLDHLRVAVKRHQPSSDFLLDSLPLPSEPKNLPPSTIADRRKADKPAPAGTRRIDQFFRKPEVQVAPAADPEAEAPAEADAEAKDAPEADSEAQAAPVEDPEAEPSAEADAEAKAAPEADSEAQATGAEADAGAEVAAEAEAAVHVDEC* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0416 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 134 - -
Amo10g0416 221 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 8 134 - -
Amo10g0416 221 MobiDBLite consensus disorder prediction 89 221 - -
Amo10g0416 221 MobiDBLite consensus disorder prediction 1 20 - -
Amo10g0416 221 MobiDBLite consensus disorder prediction 107 131 - -
Amo10g0416 221 Gene3D Histone, subunit A 1 96 IPR009072 GO:0046982
Amo10g0416 221 SUPERFAMILY Histone-fold 4 97 IPR009072 GO:0046982
Amo10g0416 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 18 81 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0416 Amo-Chr10 4243040 4243705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0416 8 132 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.286 2.87e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo10g0416 CBFD_NFYB_HMF 5.9e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0416 - - adu:107468882 279.256