Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0411 ATGGCGGAGGAAGAAGAAGTTCAGATTCAAGAAAACGCGGAGTCATCCCGACCCGAATTCCCGACGGGTCGGGTGAAGAAAATAATGAGACTAGACAAGGATGTGAATAGGGTGAGCGGAGAAGCGCTGTTCCTGGTGTCGCGCTCCACCGAGTTGTTTCTCCACTTCCTGGCTGAGAAATCGGCGCGCGTGGCCATCGAGAAGAAGCGCAAAACGGTTACCATTGACCACCTTCGGGTCGCAGTCAAGAGGCACCAACCTAGCAGCGATTTCCTCCTCGACTCGCTCCCTCTGCCTTCTCAGCCCAAAAATCTCCCTCCTTCCACCGCCGCCGACCGGAGAAAAGCTGATAAGCCCGCACCTGCCGGCACTCGTCGCATCGATCAGTTCTTCCGGAAGCCTGAAGTCCAAGTTGCTCCCGTGGCAGATCCTGAAGCCGAAGCTCCTGCGGAAGCTGATGCTGAAGCTAAAGATGCTCCCGAAGCTGATTCTGAAGCCCAAGCTGCTCCTGTGGAAGATCCTGAAGCGGAGCCTTCTGCGGAAGCTGATGCTGAAGCTAAAACTGCTCCCGAAGCTGATTCTGAGGCCCAAGCTACTGGAGCTGAAGCTGACGCCGGAGCTGAAGTTGCTGCCGAAGCTGAAGCGGCAGTTCACGTAGATGAGTGTTAG 669 0.5605 MAEEEEVQIQENAESSRPEFPTGRVKKIMRLDKDVNRVSGEALFLVSRSTELFLHFLAEKSARVAIEKKRKTVTIDHLRVAVKRHQPSSDFLLDSLPLPSQPKNLPPSTAADRRKADKPAPAGTRRIDQFFRKPEVQVAPVADPEAEAPAEADAEAKDAPEADSEAQAAPVEDPEAEPSAEADAEAKTAPEADSEAQATGAEADAGAEVAAEAEAAVHVDEC* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0411 222 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 135 - -
Amo10g0411 222 MobiDBLite consensus disorder prediction 110 132 - -
Amo10g0411 222 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 8 135 - -
Amo10g0411 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 82 IPR003958 -
Amo10g0411 222 Gene3D Histone, subunit A 1 97 IPR009072 GO:0046982
Amo10g0411 222 MobiDBLite consensus disorder prediction 1 22 - -
Amo10g0411 222 MobiDBLite consensus disorder prediction 90 222 - -
Amo10g0411 222 SUPERFAMILY Histone-fold 6 98 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0411 Amo-Chr10 4212303 4213026 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0411 9 133 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.062 5.09e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo10g0411 CBFD_NFYB_HMF 1.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0411 - - adu:107468882 303.523