Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0368 GCTTGGGTTCACGTCACACACCCTTATTATAAATACCTTAGCTTCTCTATTTGTACTATAAATACCACTCATCTTCACCATTACTCTAACTTGACACATTCCCGAAACAATGTGAACTTTCCACCGGGGGTTGTCGATTTTATCCAACAGATGACAGAAGCCTTTGGAAATCAATGGTACTACTACAGCAGGAGAACACAGAGTAGGGTGACTGAGAATGGATATTGGAAAGCAACGGGAATGGAAGAACCAGTGATGACAAGCTCAACYAACAAGAGAGTTGGCATCAAGAAATACTTTGTKTTTCATCTTGGTGAATCCCCTTCTGCTATCAAAACAAATTGGATAATGCAAGAATATTGCCTTTCCGATTATTCTGCTTCCTCTAGCAGATCCTCCAAAAGAAAATCAGATTATAGTAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGAGATGATGATGATGGAACGGAGCTGTCTTGTTTGGATGAAGTTTTCTTGTCACTCGATGATCTTGATGAAATAAGCTTACCAAATTAA 543 0.3923 AWVHVTHPYYKYLSFSICTINTTHLHHYSNLTHSRNNVNFPPGVVDFIQQMTEAFGNQWYYYSRRTQSRVTENGYWKATGMEEPVMTSSTNKRVGIKKYFVFHLGESPSAIKTNWIMQEYCLSDYSASSSRSSKRKSDYSKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0368 180 Pfam No apical meristem (NAM) protein 53 122 IPR003441 GO:0003677|GO:0006355
Amo10g0368 180 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 54 177 - -
Amo10g0368 180 ProSiteProfiles NAC domain profile. 1 150 IPR003441 GO:0003677|GO:0006355
Amo10g0368 180 PANTHER NAC TRANSCRIPTION FACTOR 56 54 177 - -
Amo10g0368 180 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Amo10g0368 180 SUPERFAMILY NAC domain 56 149 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0368 Amo-Chr10 3693817 3695306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0368 58 152 NAC Transcription Factor Family AT5G63790 39.806 2.64e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo10g0368 NAM 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0368 - - gmx:100170712 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0527 20 6689031 6690317 Amo10g0368 10 3693817 3695306 hybridization
Amo13g5222 13 152178145 152180155 Amo10g0368 10 3693817 3695306 PCT
Amo10g0368 10 3693817 3695306 Amo13g5222 13 152178145 152180155 PCT