Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0354 ATGAAATCCCCATTAGTGAAGATTAGTGTGGGAAACGTGGAGATGGTGACTTCAACTTGCAAGGGTTCTTTTCTTGTTTGTGCAATTTTGGTGCTTGATTTGGTGCTTAAGGTCTCTGGCAATGCAGAAGGTGATGCCCTAAATGCATTGAAGAGCAACTTACAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCCACCCTTGTCAATCCATGCACATGGTTTCATGTTACATGCAATAGTGATAATAGTGTGACCCGTSTTGATCTTGGAAATGCAGATCTATCGGGTACATTGGTTCCAAACCTTGGTAATCTACCAAATTTACAGTACCTGGAGCTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTCGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAATGTGCTAACTGGTCCAATACCAGCTACATTGGGCAAGCTTAGTAATCTACGCTTCCTGCGTCTCAACAATAACACCTTGTCAGGAGGCATTCCCATGTCTTTGACCGGGATCAATTCACTGCAAGTTCTTGATCTCTCAAACAACCAGCTAAAAGGAACTGTGCCAGTCAATGGTTCATTTTCATTGTTTACTCCGATCAGTTATCAAAATAATCCTGRCTTGATACAACCAAAGAATGCTCCTTCTGCGCCATTATCTCCTCCATCAGCACCTTCTTCAGGTAACAGTGCTACTGGAGCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCYTTGTTGTTTGCAGCCCCTGCTATCGCACTTGCATATTGGCGAAGAAGGAAGCCTCAGGATCATTTCTTTGATGTCCCTGCTGAGGAGGATCCTGAAGTTCACCTAGGCCAGCTTAAAAGGTTTTCGCTGCGTGAGCTGCAAGTTGCAACAGATAACTTTAGTAACAAACATATTCTTGGTAGAGGTGGATTTGGGAAGGTATATAAAGGGCGTTTAGCTGATGGTAGTCTTGTAGCAGTAAAAAGGCTGAAAGAGGAGCGCACACAGGGTGGGGAGCTGCAATTTCAAACAGARGTGGAAATGATCAGCATGGCCGTGCATCGCAATTTGCTTCGGCTCCGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTGGCATCATGTTTACGAGAACGTAATGAATCTCAACCGCCACTTGACTGGCCAATACGCAAGTGTATTGCATTGGGAGCTGCTAGGGGGCTTGCTTATTTGCACGACCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTATTGGATGAAGAATTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCGAAACTTATGGATTACAAAGATACTCATGTTACCACTGCTGTACGTGGTACAATTGGGCATATAGCACCAGAGTACCTCTCAACTGGGAAGTCRTCAGAGAAGACWGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACCGGGCAGAGGGCTTTCGATCTGGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGGCTTCTTAAAGACAAGAAATTGGAAACACTGGTTGACGCGGATCTGCAGGGCAATTATAACGATGAGGAGGTAGAGCAGCTAATCCAAGTAGCGTTGCTATGCACACAAGGCTCCCCTATGGAAAGACCGAAGATGTCCGAGGTGGTTAGAATGCTAGAAGGCGACGGTTTGGCCGAAAAATGGGAGCAGTGGCAGAAAGAGGAGATGTTCCGTCAAGATTTTAACCACATCCATCACCCTAATGCAAATTGGATAGTAGACTCTACTTCTCACATCCAAGCAGATGAACTATCTGGTCCTAGATGA 1884 0.4411 MKSPLVKISVGNVEMVTSTCKGSFLVCAILVLDLVLKVSGNAEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRXDLGNADLSGTLVPNLGNLPNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNVLTGPIPATLGKLSNLRFLRLNNNTLSGGIPMSLTGINSLQVLDLSNNQLKGTVPVNGSFSLFTPISYQNNPXLIQPKNAPSAPLSPPSAPSSGNSATGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERNESQPPLDWPIRKCIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNHIHHPNANWIVDSTSHIQADELSGPR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0354 627 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515
Amo10g0354 627 MobiDBLite consensus disorder prediction 215 239 - -
Amo10g0354 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Amo10g0354 627 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0354 627 Gene3D Ribonuclease Inhibitor 40 223 IPR032675 -
Amo10g0354 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Amo10g0354 627 Pfam Protein kinase domain 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0354 627 PANTHER BNAA08G11770D PROTEIN 26 627 IPR031048 GO:0004675|GO:0005102|GO:0006468
Amo10g0354 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 26 627 - -
Amo10g0354 627 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Amo10g0354 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Amo10g0354 627 SUPERFAMILY L domain-like 43 206 - -
Amo10g0354 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Amo10g0354 627 ProSiteProfiles Protein kinase domain profile. 304 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0354 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0354 Amo-Chr10 3553726 3559909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0354 29 627 Receptor kinase-like Gene Family AT4G33430 78.428 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo10g0354 Pkinase 7.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0354 K13416 - gmx:100800522 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0515 20 6530820 6537013 Amo10g0354 10 3553726 3559909 hybridization