Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0348 ATGGACGTGTTATCGATGAGCAGTTTAAAAACACTACCTAACCAGTGGTGTGGAGTCCCAGAGCGAAAAAGAGGGGTGGTTTCATGCAGAGCGACAACGGTAGCAAATAGCAACACTAACTTGTACAAGGTGCTGTCACTGAGTCCCAAGAGTGCAACAATGGATGATATCAAGAGAGCATACAGATCAATGGCTCTAAGGTACCACCCTGACGTCTGCCATGACCCTTCCAAGAAAGATGAATCCACAAGGCTCTTCGTGCAGCTCAATCAAGCCTATGAGACCTTGTCTAATCCCACCCTCAGACAAGAGTACGATCATCAATTAGGCTTGATAACCGCTCATGATGAAAGCTCCAGAAAGAGGTGGAAGGAGCAACTTGCTGAGTTGAAGACAAGGTCCCACAGAAAACAGGGATCATGGGGTAGTAGAATGAGGGCCCAAAACATTATCATCATGATGAACAATCACAACTAG 477 0.4612 MDVLSMSSLKTLPNQWCGVPERKRGVVSCRATTVANSNTNLYKVLSLSPKSATMDDIKRAYRSMALRYHPDVCHDPSKKDESTRLFVQLNQAYETLSNPTLRQEYDHQLGLITAHDESSRKRWKEQLAELKTRSHRKQGSWGSRMRAQNIIIMMNNHN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0348 158 ProSitePatterns Nt-dnaJ domain signature. 86 105 IPR018253 -
Amo10g0348 158 PRINTS DnaJ domain signature 43 61 IPR001623 -
Amo10g0348 158 PRINTS DnaJ domain signature 61 76 IPR001623 -
Amo10g0348 158 PRINTS DnaJ domain signature 81 101 IPR001623 -
Amo10g0348 158 ProSiteProfiles dnaJ domain profile. 40 109 IPR001623 -
Amo10g0348 158 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 22 150 - -
Amo10g0348 158 Pfam DnaJ domain 40 106 IPR001623 -
Amo10g0348 158 Gene3D DnaJ domain 27 139 IPR036869 -
Amo10g0348 158 SMART dnaj_3 39 101 IPR001623 -
Amo10g0348 158 CDD DnaJ 40 98 IPR001623 -
Amo10g0348 158 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 22 150 - -
Amo10g0348 158 SUPERFAMILY Chaperone J-domain 28 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0348 Amo-Chr10 3507024 3507500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0348 42 116 C2H2 Transcription Factor Family AT1G74250 37.662 8.76e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0348 - - vun:114187063 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0511 20 6460425 6461024 Amo10g0348 10 3507024 3507500 hybridization