Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0325 ATGGCGGAGCGTCCTTCCTTCGGATTGGGTCCTCGATTGGACTTTCAGCAACTACAATTTGAAGCCCAGCATCGCTGGTTGAGACCTGCAGAAATTTGTGAAATTCTTCGTAACTATCGGATGTTTCAAATCACGTCAGAACCTCATAACAGGCCACCAAGTGGTTCACTATTTCTATTTGATCGAAAGGTTTTGAGATACTTCAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACCGTGAAAGAAGCTCATGAAAAATTGAAGGTGGGAAGTGTTGACGTGTTGCATTGCTACTATGCCCATGGTGAAGAAAATGAAAATTTTCAGAGACGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTATTCGTACATTATTTGGAAGTTAAGGGTAACAAGACAAATACTGGAGGAAATATAGATAGTTATGATGTTTCGTCTGACTCCCAAAGGACCCCTTCTCCATCATCTGGCTTACCAACAAATTATAGCAACTTGCCTTCACTGAGTACAGATTCCATGAGTCCAGCTAGCAGTTTGGCATCTTTACGTGAAGATGCTGATTCTGAGGAGATTCACCAAGCAAGCTCCAGATTACACACACTAAATGAGTCACAACATACGCGGAATGGTCACCTGACAGACAAAGTTGATACTGGTGATCGAGGACAGTCTTCAATTTCTGGAGATTATATCCCAGTTGTTCCGGGTGAAAGATTTGGAGGAAGTGATACTACTTATATTGATGGTCAGAAAGCACATAGCATGGCATCCTGGGACACTGTGTTGAAGCAATGCAATGCAGAATTGCAGAGTGATCCTTCGTTTGTACCATTTTCTTCCATACCATCGAGTTTGATAGGAAACACTGTAGAACAAGAACGTAATGACTTTGGTGATCTCTTAGGGAGCAAAAGTAGCCTCACTGAGGAGGCAGGGAGCTCGCAATCTATCCAATCAAACTGGCAGATTCCTTTTGAAGAAAGTTCAGGACGCTTGCCAAACTTAACCCAATCATTGAGTTTGGAATTTGGATCCGATTATATATCTGGTTTAGTTGGGAATGAAACACTTAATGCAAGTTCTGAAATTGATCCTCACCTGTTTAACTTTCATGGTGAGCCGAAAGAGCAGCATGTGCAACAACACTATCCAGAACGGCATGCAGATGGACAATCTCAGTATGCACTTCAATCCAATTCTCTGAATAAAGTTCTTGGTGAAGAAAGTCTCAACCATGCTTTCACAGCAAAGCGCACATTATTGGATGGAGACGAGAGCCTGAAAAAAGTTGATAGCTTCTCTAGGTGGATTACTAAAACCCTTGGAGAGGTGGATGATTTGAATATGCAGTCTTCAGCTGGTATTTCATGGGGTACAGATGAATCTGGGCATGTGATAGATGATTCCTCATTGAGCCCGTCCCTTTCTCAGGATCAGCTGTTTAGCATAAATGAATTTTCCCCCAAATGGGCTTATGCTGAAGTGGAAACTGAGGTGGTAATTGTTGGATCTTTTTTGAAGTATCAACCGGAGGTGTCAACCTCTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTCCCTGCTGAGGTTTTAACTAATGGAATTCTGTGTTGCCAGGCTCCACCTCATAAGGTTGGACGGGTTCCTTTCTATGTAACATGTTCAAATAGATTAGCTTGCAGTGAAGTGCGTGAATTCGACTATAGAGAAGGCTTTTCTGGAAATGTAGAATTTGCAGATTTTTATAACGATTCAACTGAAAGGCTGCTGCATTTGCGATTGGAAGAGTTTCTGTCCTCAAAACCAGTGTGCCCATCTAAACAAACCTTTGAGAATGATATGGAGAAAAGAGATGTAATTTTAAAGCTTATTTTCTTAAGAGAGGAAGAGGAATTCTCGAGTAAGGAAGAGCAACATGTAGAATCTGATACATCCTCACAGAAGGTGAAGGCGCATCTGTTTCACAGGCAGATTAAAGAGAAGCTGTACTCATGGCTTCTGCACAAAGTAACGGAAAGTGATAAAGGTCCTAATGTGTTAGATAAGGATGGACAGGGTGTTTTACATTTAGCAGCTGCTCTTGGGTATGATTGGGCTATACAACCAATTTTAACTGCTGGAGGTGGTATCAATTTCCGTGATGTAAATGGATGGACAGCCCTACATTGGGCTGCATCCTGTGGCAGAGAGCGGACGGTGGTTGTCCTTGTCACCATGGGTGCAAATTCTGGAGCATTGACAGATCCATCTCCAGCATTTCCAACCGGAAGAACAGCTTCAGAGCTTGCCTCTACCAATGGGCACAAAGGAATATCTGGTTTCCTTGGTGAATCTTTATTAACCAGTCATCTTGAATCCCTCACAATGGATGATCAATATAAAGGTGGCAGGCAAGAGATTTCAGTAACAAAAGTAGTGCAGACAGTTTCAGAACGAACTGCTACCCCTGTGTTATATGGGGATGATATGCCAGATGATCCCTGCCTTAAGGATTCCCTTACTGCTGTTATTAATGCTACACAAGCTGCAGATCGTATACATCAGGTATTCAGAATGCAGTCTTTTCAGAGGAAGCAGTTGAATAAACTGGCAGATGATGAGTTTGGATTGTCAGACCCGCGAGCTCTTTCCCTTCTAGCATCTAAGGCAAGCAAATCTGGACAAGGAGATCGTTTAGCCAATGCTGCTGCAACACAGATACAGAAGAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTTAGGAAGAGTCTAAAAAGCATAATCTGGTCTGTGGGAATCCTTGAGAAAGTGATATTACGGTGGAGACGCAAGGGCAGTGGCTTGCGCGGATTTAAACCCGATGCCCTTAATAAGGCCCCCATTCAACAGAGTGATCCGCCGAAAGAAGATGATTATGATTTCCTCAAGGAAGGAAGAAAACAAAGTGAGGAGAAGTTCCAAAAGGCCCTTTCAAGGGTCAAGTCCATGGTTCAATATCCAGAGGCACGTGCTCAATACCGGCGCCTGCTAAATGTTGTTGACGACTTCCGTCAAACCAAGGCATGTAATATGGATTTAGTAAATTCTGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTCTTAGATGATGACAATTTTATTCCCATAGCATTTGATTGA 3231 0.4246 MAERPSFGLGPRLDFQQLQFEAQHRWLRPAEICEILRNYRMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKTNTGGNIDSYDVSSDSQRTPSPSSGLPTNYSNLPSLSTDSMSPASSLASLREDADSEEIHQASSRLHTLNESQHTRNGHLTDKVDTGDRGQSSISGDYIPVVPGERFGGSDTTYIDGQKAHSMASWDTVLKQCNAELQSDPSFVPFSSIPSSLIGNTVEQERNDFGDLLGSKSSLTEEAGSSQSIQSNWQIPFEESSGRLPNLTQSLSLEFGSDYISGLVGNETLNASSEIDPHLFNFHGEPKEQHVQQHYPERHADGQSQYALQSNSLNKVLGEESLNHAFTAKRTLLDGDESLKKVDSFSRWITKTLGEVDDLNMQSSAGISWGTDESGHVIDDSSLSPSLSQDQLFSINEFSPKWAYAEVETEVVIVGSFLKYQPEVSTSNWSCMFGEVEVPAEVLTNGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSGNVEFADFYNDSTERLLHLRLEEFLSSKPVCPSKQTFENDMEKRDVILKLIFLREEEEFSSKEEQHVESDTSSQKVKAHLFHRQIKEKLYSWLLHKVTESDKGPNVLDKDGQGVLHLAAALGYDWAIQPILTAGGGINFRDVNGWTALHWAASCGRERTVVVLVTMGANSGALTDPSPAFPTGRTASELASTNGHKGISGFLGESLLTSHLESLTMDDQYKGGRQEISVTKVVQTVSERTATPVLYGDDMPDDPCLKDSLTAVINATQAADRIHQVFRMQSFQRKQLNKLADDEFGLSDPRALSLLASKASKSGQGDRLANAAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKSLKSIIWSVGILEKVILRWRRKGSGLRGFKPDALNKAPIQQSDPPKEDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNVVDDFRQTKACNMDLVNSEETVDGVEDLIDIDMLLDDDNFIPIAFD* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0325 1076 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1076 - -
Amo10g0325 1076 ProSiteProfiles Ankyrin repeat profile. 723 755 IPR002110 GO:0005515
Amo10g0325 1076 SUPERFAMILY Ankyrin repeat 680 782 IPR036770 -
Amo10g0325 1076 Pfam IPT/TIG domain 490 568 IPR002909 -
Amo10g0325 1076 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515
Amo10g0325 1076 Pfam IQ calmodulin-binding motif 902 920 IPR000048 GO:0005515
Amo10g0325 1076 SMART iq_5 899 921 IPR000048 GO:0005515
Amo10g0325 1076 SMART iq_5 922 944 IPR000048 GO:0005515
Amo10g0325 1076 MobiDBLite consensus disorder prediction 144 242 - -
Amo10g0325 1076 ProSiteProfiles IQ motif profile. 923 947 IPR000048 GO:0005515
Amo10g0325 1076 MobiDBLite consensus disorder prediction 144 188 - -
Amo10g0325 1076 Pfam Ankyrin repeats (3 copies) 671 749 IPR002110 GO:0005515
Amo10g0325 1076 SMART CG_1_2 18 136 IPR005559 GO:0003677
Amo10g0325 1076 SMART ANK_2a 690 719 IPR002110 GO:0005515
Amo10g0325 1076 SMART ANK_2a 723 752 IPR002110 GO:0005515
Amo10g0325 1076 Gene3D - 653 785 IPR036770 -
Amo10g0325 1076 Gene3D - 898 946 - -
Amo10g0325 1076 Gene3D Immunoglobulins 483 578 IPR013783 -
Amo10g0325 1076 ProSiteProfiles IQ motif profile. 900 929 IPR000048 GO:0005515
Amo10g0325 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 950 IPR027417 -
Amo10g0325 1076 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Amo10g0325 1076 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Amo10g0325 1076 ProSiteProfiles Ankyrin repeat region circular profile. 723 749 - -
Amo10g0325 1076 SUPERFAMILY E set domains 490 576 IPR014756 -
Amo10g0325 1076 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1076 - -
Amo10g0325 1076 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0325 Amo-Chr10 3296581 3304887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0325 1 1057 CAMTA Transcription Factor Family AT5G64220 52.206 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Amo10g0325 CG-1 1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0325 K21596 - gmx:100818124 1576.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0590 20 7433744 7442516 Amo10g0325 10 3296581 3304887 hybridization
Amo13g5191 13 151827404 151834529 Amo10g0325 10 3296581 3304887 PCT
Amo10g0325 10 3296581 3304887 Amo13g5191 13 151827404 151834529 PCT