Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0316 ATGGTGAAATTCGGAGAGAGGAAGAGGAAGAGAGGGCGGAAGCCGAAGGTGAAGGTGAACTTGGAGGAATCCTACAGCGGGATGGAGATTGTGAACAAGAACGGAGTGGTGATCAATCTGATGGATCTAGCGAAGGCGGAGGATCCTTTTGCGGAGGAGCTGAGGAGGCGGACTGACGGACTGCAGGGAGAGGAGGAGCTGTTAGGGTTTCTGAGGGATTTAGAGGGACAGTGGGGAAGCAGGAGGAGGAAGAGGAGGATTGTGGACGCTGCCAATTTCGGTGACGCATTGCCGCTTGGTTGGAAGCTTATTCTCGGGTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGTCGCAGATACATAAGCCCTAGTGGACAGCAATTTATGTCTTGTAGAGAAGTTGCTTCCTATTTGCAGTCTCTTATTGGCCATAGTGATGCACCGTTGCAAATCGGTCATAGGAGTGAGAATTTGCCGCAGGAACAAAGAGCAATCACTGAACACTCTGCAGGTGTTGCCCATGAGGATCAACGTGAATGGCAGATTGTTGTAGCTAACTCAGATGTACCTAGTTTTTCTGTTTCTAATGAACGTGGGATGGAATTGGCCTTGTTGGGTTTGGAAAATCTTGCAGACGTGGAAATACATGACCTATTTGAATGTCACAAATGCAATGTGACCTTTGACGAGAAGGATTCATACTTGCAGCACTTATTGTCATTTCACCAGAGAACAACAAGACGATATCGGCTTGGATCTTCTCTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCACAAGGTGTTTTCAGAAAGGCGTCGCTACAGTTCTCATGTGGGGATCCATGTTAGGAGTAATGTGAGGCAGGCTGAAGATTCGTCAGGTCTGGAAAATGTTCAACGGACAGACAAGTCTCCTGTGAGGGAGGACATGCTGCTTTCAAGAATCTCCAGGATGGATGCCCTTATTGAAATTGCTCAGAGCTCTATCATGGAGGATTGTGACATGGAGCCTGCTTCGAAAGTTGCTGCTTGTAGCTTGGATCAAGATATAAACTTTGAGTCAGAACAGCAAATGGAAGATAGCTTAAATGGAACAAATGTTGTTCAAGTTTTAAATCAGCAGGATAGTCCAGAGTTACACATGGATGTGGAAGAAGAGGAAACTGATGATGATAGCCAAGTTATTGATGCAAAGATGGTTACTTGTCTAGATCACACGGGTTTGTTATGTGTAAATGAGAAAAATGGTAATCCATCTGTTGAAGTGTTTGATAAGTCTGGGATTGATATGGGAGGAGCTTCTCAAGGCCCTTTGCTTAATTTATCTTGCAAGGACAAAATATCAGATTCTGGGGAGAATGAAAATTTTTGTTGCTCTAATATCAAAGAAAAGTTTAAGTTTAATGAAGATAACAATAATAAGAATGAATTGGAAATTGGTTCAGATGGTTGCAAAGATGTTCCTCTTAGGACCAATGTTCAAGAGTTGCTAATGCCAGCTTCTGAAGAAAATGTGATCGACTCTAGGGTTTCTAAATCTCCTATATCCCAAATGCAACCTTTGTATTCCTCTCCTGCTTTCAGCTCTTATAAGGTAGGAAAACAATCTTGTACTGAAGATCATGAGTATAAAAATGTGAAGCGGTTCCAGGAATTGGATGAAGTCAGTACTACTAAGCATGATGCTACAAGTGTTCAAGATTCCTTTTCACTGCCTGATGTGCAAACTGATACGATAAACAAAACAGTGATGGAAACAACATATCCCTCTTCTGTTCAGGTTGAATCACAAGAAGTTATGCAGCTTACAACTGTGTGTGTTTGGTGTGGAATAGAGTTCAACCATGATGCCCTTAATTCTGAAATACAACCTGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAATTAATGTGTTGGACAGTTGA 1968 0.4253 MVKFGERKRKRGRKPKVKVNLEESYSGMEIVNKNGVVINLMDLAKAEDPFAEELRRRTDGLQGEEELLGFLRDLEGQWGSRRRKRRIVDAANFGDALPLGWKLILGLKRKDGRAWIYCRRYISPSGQQFMSCREVASYLQSLIGHSDAPLQIGHRSENLPQEQRAITEHSAGVAHEDQREWQIVVANSDVPSFSVSNERGMELALLGLENLADVEIHDLFECHKCNVTFDEKDSYLQHLLSFHQRTTRRYRLGSSLGDGVIIKDGKFECQFCHKVFSERRRYSSHVGIHVRSNVRQAEDSSGLENVQRTDKSPVREDMLLSRISRMDALIEIAQSSIMEDCDMEPASKVAACSLDQDINFESEQQMEDSLNGTNVVQVLNQQDSPELHMDVEEEETDDDSQVIDAKMVTCLDHTGLLCVNEKNGNPSVEVFDKSGIDMGGASQGPLLNLSCKDKISDSGENENFCCSNIKEKFKFNEDNNNKNELEIGSDGCKDVPLRTNVQELLMPASEENVIDSRVSKSPISQMQPLYSSPAFSSYKVGKQSCTEDHEYKNVKRFQELDEVSTTKHDATSVQDSFSLPDVQTDTINKTVMETTYPSSVQVESQEVMQLTTVCVWCGIEFNHDALNSEIQPDSVGFMCPACKAKISGQINVLDS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0316 655 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 4 652 - -
Amo10g0316 655 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 652 IPR037472 -
Amo10g0316 655 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Amo10g0316 655 ProSitePatterns Zinc finger C2H2 type domain signature. 222 243 IPR013087 -
Amo10g0316 655 Gene3D Classic Zinc Finger 209 297 - -
Amo10g0316 655 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 87 159 IPR001739 GO:0003677
Amo10g0316 655 SUPERFAMILY DNA-binding domain 95 147 IPR016177 GO:0003677
Amo10g0316 655 SMART c2h2final6 267 289 IPR013087 -
Amo10g0316 655 SMART c2h2final6 220 243 IPR013087 -
Amo10g0316 655 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 248 IPR013087 -
Amo10g0316 655 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 294 IPR013087 -
Amo10g0316 655 Gene3D - 75 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0316 Amo-Chr10 3186597 3190508 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo10g0316 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0316 - - adu:107468625 1282.7