Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0302 ATGCAAGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAGGATCTCGGAACTGCATCTGCTAGTCAGGTCAACAGAGAGGAGATAGATTCTCGTTCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAGCAGCATTTTCAATCATGTGGAACAGTAAACAGAGTCACCATTCGGACTGATAAGTTTGGCCAACCCAAGGGTTATGCGTATGTAGAGTTTATTGAAACAGAGGCTGTTCAAGAGGCCCTTTTGCTGAATGAATCTGAATTGCATGGGCGTCAATTAAAGGTAACAGCTAAGAGGACGAACATACCCGGGATGAAGCAGTTCCGTGGCCGCCGACCTAATCCACACATGGGATTTAGAGGCAGACCGCCATATGCACCTCCTTTCGCCTATGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGCTATAGCCCCTACTATTGA 480 0.4688 MQAKVEKEMGSVQDLGTASASQVNREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFIETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQFRGRRPNPHMGFRGRPPYAPPFAYAPYGYGKVPRFRMPMRYSPYY* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0302 159 Gene3D - 25 111 IPR012677 -
Amo10g0302 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 107 IPR000504 GO:0003723
Amo10g0302 159 MobiDBLite consensus disorder prediction 1 21 - -
Amo10g0302 159 SUPERFAMILY RNA-binding domain, RBD 20 130 IPR035979 GO:0003676
Amo10g0302 159 SMART rrm1_1 32 103 IPR000504 GO:0003723
Amo10g0302 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 101 IPR000504 GO:0003723
Amo10g0302 159 CDD RRM_II_PABPs 32 103 - -
Amo10g0302 159 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 156 - -
Amo10g0302 159 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0302 Amo-Chr10 3032714 3036051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0302 32 102 Eukaryotic Initiation Factors Gene Family AT2G23350 31.944 3.51e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0302 K14396 - cpap:110806579 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5185 13 151737915 151740407 Amo10g0302 10 3032714 3036051 PCT
Amo10g0302 10 3032714 3036051 Amo13g5185 13 151737915 151740407 PCT