Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0294 ATGGCTTCTTTGAATCTCTCCTATTCTTCTTCTTCACCAGCACTCTCACACACAAGGGCAATCAAACAGTTCAAATTGTTCAATGGACTGAATTCAGCAATTGTGAATGGACAGGGACCTGATTTTCCCTTTGTCCGGTTGAGCTCTAAATTTTCGTCAACTGAAAATGCTGTTTCCAAGGTCAAAGCTACATTGATCTCTGGAGGAGGTGACCTACTTTCTTATCCAAATGGCAGTGCTGTTGAGAATTTAGACAAAGATAAATCTGTTGGAATTGAGGTTCAACCTGATGCAATAGCATTTGGATCCCTGCCTACGGACACCACCCTGTCGAGCATTGGTTTTAGCATTGAGAATGATGAATTTGATTTGGATGCACCCACCAAAGGTTTTGCTTCCATCCCTGAGGCCATTGAAGATATTCGCCAGGGAAAGATGGTAGTTGTTGTAGATGACGAAGATCGTGAAAATGAAGGGGACTTGATAATGGCAGCGCAGTTGGCAACACCAGAGGCCATGGCTTTTATTGTGAAGCATGGAACTGGTATAGTATGTGTGAGCATGAAGGAGGAAGATCTCGAAAGGTTGGAACTTCCTTTGATGGTAAACAGCAAAGACAATGATGAGAAACTCCGAACAGCATTCACTGTGACAGTGGATGCCAAACATGGTACCTCCACAGGGGTATCAGCTCAAGATAGAGCAACGACCGTATTGGCCCTTGCATCAAAGGATTCTACACCTGGTGACTTCAACCGCCCAGGCCATATTTTCCCACTAAAGTACAGGGAAGGTGGTGTTTTGAAGAGAGCCGGACACACAGAAGCTTCGGTGGATCTTACTGTACTTGCTGGTTTGGATCCAGTGGCAGTTCTATGTGAGGTTGTTGATGATGACGGTTCGATGGCTCGGTTGCCAAAGCTTCGCGAGTTTGCAGAGCGTGAAAATTTGAAAATCGTGTCTATTGCTGACTTGATAAGATATAGAAGAAAGAGAGATAAACTCGTTGTTCATGCTGCTGCTGCCCGGATACCTACAATGTGGGGACCGTTCACAGCTTACTGTTATAGATCACTCCTAGATGGGATTGAGCATATTGCAATGGTTAAGGGTGACATTGGTGATGGACAAGATGTTCTTGTCAGGGTACACTCGGAGTGCCTGACAGGAGACATATTCGGGTCTGCCAGATGCGATTGTGGGAATCAACTTGCACTGGCAATGCAACAGATCGAGGCTGCAGGCAGGGGTGTACTGATATACCTCCGTGGACACGAAGGGAGGGGTATCGGGTTGGGACATAAGCTTCGTGCTTACAACCTACAGGACGATGGACGTGATACGGTTGAAGCCAACGAGGAGTTGGGATTGCCCGTTGACTCTAGGGAGTACGGTATTGGTGCGCAGATATTGAGAGACTTGGGTGTTCATTCTATGAAGTTGATGACAAACAATCCAGCAAAGTATGTTGGACTCAAAGGATATGGTTTGACAGTTACAGGGAGAATCCCACTGGTAACTCTCATCACACCAGAGAATAAGAGGTATTTAGAGACCAAGTGCGTGAAAATGGGACACATGTATGGCTTGGAGTTTAAGAGCCAATTGAACAGTAATGGCAGTGTCAATGGTGAAGCCAACAGTGTAGATGATTCCAATGCTGTTACTAGCTTATAA 1677 0.4556 MASLNLSYSSSSPALSHTRAIKQFKLFNGLNSAIVNGQGPDFPFVRLSSKFSSTENAVSKVKATLISGGGDLLSYPNGSAVENLDKDKSVGIEVQPDAIAFGSLPTDTTLSSIGFSIENDEFDLDAPTKGFASIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLERLELPLMVNSKDNDEKLRTAFTVTVDAKHGTSTGVSAQDRATTVLALASKDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDPVAVLCEVVDDDGSMARLPKLREFAERENLKIVSIADLIRYRRKRDKLVVHAAAARIPTMWGPFTAYCYRSLLDGIEHIAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLIYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVHSMKLMTNNPAKYVGLKGYGLTVTGRIPLVTLITPENKRYLETKCVKMGHMYGLEFKSQLNSNGSVNGEANSVDDSNAVTSL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0294 558 Gene3D GTP cyclohydrolase II 336 507 IPR036144 -
Amo10g0294 558 SUPERFAMILY RibA-like 334 505 IPR036144 -
Amo10g0294 558 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 132 329 IPR000422 GO:0008686|GO:0009231
Amo10g0294 558 CDD GTP_cyclohydro2 335 527 IPR000926 GO:0003935|GO:0009231
Amo10g0294 558 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 129 333 IPR000422 GO:0008686|GO:0009231
Amo10g0294 558 SUPERFAMILY YrdC/RibB 130 332 IPR017945 -
Amo10g0294 558 TIGRFAM ribA: GTP cyclohydrolase II 340 527 IPR000926 GO:0003935|GO:0009231
Amo10g0294 558 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 130 526 IPR016299 GO:0009231
Amo10g0294 558 PANTHER 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE 3 556 - -
Amo10g0294 558 Pfam GTP cyclohydrolase II 341 504 IPR032677 -
Amo10g0294 558 PANTHER GTP CYCLOHYDROLASE II-RELATED 3 556 - -
Amo10g0294 558 Hamap GTP cyclohydrolase-2 [ribA]. 334 530 IPR000926 GO:0003935|GO:0009231
Amo10g0294 558 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 136 328 IPR000422 GO:0008686|GO:0009231
Amo10g0294 558 Gene3D DHBP synthase 119 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0294 Amo-Chr10 2971907 2976027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0294 K14652 - gmx:100801046 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3939 13 131627810 131632035 Amo10g0294 10 2971907 2976027 PCT
Amo10g0294 10 2971907 2976027 Amo13g3939 13 131627810 131632035 PCT