Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0279 ATGAAAAGAGAATTATTGAACAGAAATATGACGAAACATAAGATAGAAATAAAGAAGATAGAGAACATAGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGAAGAAGTCTGTTCAAGAAGGCCGGGGAGCTTTCAACTCTCTGTGATGCAGAGGTGGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACACTCTAGTTCAAGTGTGGAACAGGTAGTAGAAATGCACAAAAATATGCATTCAAGCATCGACAAATCATCATATCACCCTCCAATGGAATTGCAAATGCGCAATGAGGTGGCAGATAAGACTCATGAATTAAGACAGTTAAATGGAGAAGAGCTTCAAGAATTAAAATTTCAAGAACTAATGAAACTTGAAGAACGTCTACTCAAAGGTCTGACCCGCGTTTTAAAAGCTAAGGATGAAAGAATGGCAAATGACATCACTGTCCTCGCAAAAAAGGGAGTGGATCTAATGCAAGAGAATAAGAAATTGCTGCAGATTGTTGATGAAAAAGAACAAGCATGA 537 0.3911 MKRELLNRNMTKHKIEIKKIENIAARQVAFSKRRRSLFKKAGELSTLCDAEVALLVFSATGKLFQHSSSSVEQVVEMHKNMHSSIDKSSYHPPMELQMRNEVADKTHELRQLNGEELQELKFQELMKLEERLLKGLTRVLKAKDERMANDITVLAKKGVDLMQENKKLLQIVDEKEQA* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0279 178 Pfam K-box region 97 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g0279 178 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Amo10g0279 178 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Amo10g0279 178 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Amo10g0279 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 170 - -
Amo10g0279 178 Coils Coil 3 23 - -
Amo10g0279 178 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Amo10g0279 178 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Amo10g0279 178 CDD MADS_MEF2_like 14 84 IPR033896 GO:0000977|GO:0045944
Amo10g0279 178 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 10 170 - -
Amo10g0279 178 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Amo10g0279 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Amo10g0279 178 Gene3D - 22 90 IPR036879 GO:0003677|GO:0046983
Amo10g0279 178 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0279 Amo-Chr10 2796579 2814299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0279 10 170 MADS-box Gene Family AT2G22540 52.353 6.49e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo10g0279 K-box 4.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0279 - - ahf:112784740 323.168