Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0278 ATGACCAAAATGTCAAAACAGAAGATGGAGATAAAGAAGATAGAGAAGAATGCATCAAGGCAAGCCACCTTTAGTAAGAGGAAGAGAGGGATTTTCAAGAAGGCTAAGGAGCTTTCAACTCTTTGTGATGCTGACTTGGCTCTCATTGTCTTTTCTCCTTCTGGCAAGCTCTTCGATTTCGCTTCCTCAAGTGTGCAGGAAGTAACTGAAAGATATCATATGCAAACAAGCATTTACAGATCACAAGACCAACAGTCTCATGAGTTTCAACTTGAGAAGGACACCTACTACCTGAAGTGCAAGGAACTCACAGATAAGACTATTGGACTCAGGCACTTGAATGGAGAGGAGCTGCAAGGATTGAAAATTCATGAACTACAAAAACTAGAGAGAGTGTTAGAAAAGGGTTTGGCTCGTGTTTCAAAAGAAAAGGATCAAAGAAATCTTAAAGATATTATTGAGATGAAGAAAAGGGGACTTCAAATGGTGCAAGACAACCATCGACTGAAAAAGATGAGAAGTCAAGCAAACAGCCAAGGGCAATCATCAAAGTCAAACTCTGTTGAAGAGTCAGATAACCGTGATCATGATGCTCCTAATCTCAACTTGGGGCTTCCAATGTTCGAATGA 630 0.4032 MTKMSKQKMEIKKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFASSSVQEVTERYHMQTSIYRSQDQQSHEFQLEKDTYYLKCKELTDKTIGLRHLNGEELQGLKIHELQKLERVLEKGLARVSKEKDQRNLKDIIEMKKRGLQMVQDNHRLKKMRSQANSQGQSSKSNSVEESDNRDHDAPNLNLGLPMFE* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0278 209 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g0278 209 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Amo10g0278 209 MobiDBLite consensus disorder prediction 173 187 - -
Amo10g0278 209 Coils Coil 126 146 - -
Amo10g0278 209 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g0278 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 191 - -
Amo10g0278 209 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 4 191 - -
Amo10g0278 209 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Amo10g0278 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 60 IPR002100 GO:0003677|GO:0046983
Amo10g0278 209 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Amo10g0278 209 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Amo10g0278 209 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Amo10g0278 209 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Amo10g0278 209 Gene3D - 17 96 IPR036879 GO:0003677|GO:0046983
Amo10g0278 209 SUPERFAMILY SRF-like 6 90 IPR036879 GO:0003677|GO:0046983
Amo10g0278 209 MobiDBLite consensus disorder prediction 170 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0278 Amo-Chr10 2770515 2777725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0278 4 175 MADS-box Gene Family AT2G22540 49.133 1.12e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo10g0278 K-box 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0278 - - ahf:112786765 381.333