Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0270 ATGGACACTGCGAATCAGCAGAGGCTGCAAGCAAGAACCTTTGATGATGATGATGATGATGAAGCCCAACAGCAGCAACAACAGCAACAAAAAACTGTGCTTGTTCCCATGCAGGTGAATGGTGCGTTGAACCCTTTTGATGGAGGTTCTCACGAGGTGGAAGAAGCTTTCGTGAGTTCTGGGTTGTCTTCTACTGCTACTTCTGTTCAGCCAAGAACCAGTGAGCTCACCATTGCATTTGAAGGCGAGGTTTATGTTTTCCCAGCGGTTACCCCAGAAAAGGTGCAGGCTGTATTGTTACTCTTGGGAGCCCAGGAGATGCCCAGGATTGCTGCCAGCTCTGATTCTTCGTTGCAGCAGAATTGTCAGCAGATTATGGGAATAAATGATGCTTCCCGCGGTTCAAAGGTTTCACGAAGAATTGAATCACTTGTAAGGTTCCGTGAAAAGCGAAAAGACCGATGCTTTGAGAAAAAAATCCGGTACACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCGTCACTGAAGGAAGGCTACAAATCTCCCGCTGAAAATTTCGATTCAAGCAATGGTGGAGGTGATACTTATTCACAGTCTATTGAACGTAGATGTCAGCATTGTGGAACTGGTGAGAAGTCAACTCCGGCTATGCGTCGAGGACCCTCTGGTCCAAGATCTCTGTGCAACGCCTGTGGTCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCATCAAGAATCACCTTTGAACAAAATGGACAGGATACATCAGCTGATATAAAACCTTCACCAACAGAACCAGAGAACTCTTCTCCTGACCAGAACGAGGATATCTGCCTAGAGGAAGCCAAACCTGTGCCAATAGATTCGAGACAGTCACCTGAGAGGAACAATGATCAGTATACAGTTGATACTGCGGAAGCAGTTACCAACGATTCATCTATCCAAATGGAGAATAATGCTCTCAGCATACATCAAGAGGATAATAAGCTTGAAGATTTTGCTGACGCTTCTGGGACAGAATTTGATATTCCTGCCTGTTTTGATGAGCAGGTTGACATTGACATTGATGATTCCAACATGAGGACTTACTGGCTATGA 1131 0.4545 MDTANQQRLQARTFDDDDDDEAQQQQQQQQKTVLVPMQVNGALNPFDGGSHEVEEAFVSSGLSSTATSVQPRTSELTIAFEGEVYVFPAVTPEKVQAVLLLLGAQEMPRIAASSDSSLQQNCQQIMGINDASRGSKVSRRIESLVRFREKRKDRCFEKKIRYTCRKEVAQRMHRKNGQFASLKEGYKSPAENFDSSNGGGDTYSQSIERRCQHCGTGEKSTPAMRRGPSGPRSLCNACGLMWANKGTLRDLSKASRITFEQNGQDTSADIKPSPTEPENSSPDQNEDICLEEAKPVPIDSRQSPERNNDQYTVDTAEAVTNDSSIQMENNALSIHQEDNKLEDFADASGTEFDIPACFDEQVDIDIDDSNMRTYWL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0270 376 Gene3D - 203 264 IPR013088 GO:0006355|GO:0008270
Amo10g0270 376 ProSitePatterns GATA-type zinc finger domain. 211 238 IPR000679 GO:0006355|GO:0043565
Amo10g0270 376 MobiDBLite consensus disorder prediction 1 30 - -
Amo10g0270 376 Pfam CCT motif 140 181 IPR010402 GO:0005515
Amo10g0270 376 Pfam tify domain 71 103 IPR010399 -
Amo10g0270 376 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 258 - -
Amo10g0270 376 ProSiteProfiles GATA-type zinc finger domain profile. 205 262 IPR000679 GO:0006355|GO:0043565
Amo10g0270 376 PANTHER GATA TRANSCRIPTION FACTOR 28 1 365 IPR045280 GO:0006355
Amo10g0270 376 CDD ZnF_GATA 210 253 IPR000679 GO:0006355|GO:0043565
Amo10g0270 376 SMART tify_2 69 104 IPR010399 -
Amo10g0270 376 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 1 365 - -
Amo10g0270 376 SMART GATA_3 205 258 IPR000679 GO:0006355|GO:0043565
Amo10g0270 376 Pfam GATA zinc finger 211 247 IPR000679 GO:0006355|GO:0043565
Amo10g0270 376 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Amo10g0270 376 MobiDBLite consensus disorder prediction 261 285 - -
Amo10g0270 376 ProSiteProfiles Tify domain profile. 69 104 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0270 Amo-Chr10 2718574 2722442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0270 75 255 Tify Gene Family AT1G51600 55.615 1.21e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo10g0270 CCT 5.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0270 - - adu:107468732 725.317