Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0268 ATGGCGGACGATGCCACCACAGCTCCTCCTCCATCATCTTCCGCCGCCACCGCGCCGCTCGGCTCCTCCGTGATCTCGCTCGTGAACCGCCTCCAGGACATCTTCTCCCGCGTCGGCAGTCAGTCCACCATCGACCTCCCCCAGGTGGCGGTGGTCGGCAGCCAGAGCAGTGGCAAGTCCAGCGTCCTGGAGGCTCTTGTCGGCCGCGACTTCCTCCCTCGCGGCAATGACATCTGCACGCGTCGCCCGCTCGTTCTGCAGCTCGTTCAGACCAAGCGCAAGCCAGACGGCTCCGAGGAAGAGTACGGCGAGTTCCTACACTTGTCTGGGAAAAGGTTTTACGATTTCTCCGAGATTCGTAGGGAAATCCAGGCTGAAACTGATAGGGAAGCAGGAGGGAACAAAGGTGTCTCTGACAAGCAGATTCGACTGAAGATTTTTTCACCAAATGTTCTTGATATCACGCTTGTTGATCTCCCTGGCATAACAAAGGTTCCTGTGGGTGACCAGCCTTCTGATATTGAAGCCCGAATCAGAACAATGATCATGTCATATATTAAAACCCCGACCTGTCTCATTCTGGCTGTCACTCCAGCAAATTCAGATTTGGCCAATTCAGATGCTCTTCAGATGGCGGGAGTTGCTGATCCTGAGGGTAATAGAACAATTGGCGTGATCACAAAGTTGGATATCATGGACAGAGGTACTGATGCCCGGAATCTATTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGGATATCTTAATGAACCGGAGTATAAAGGATGCTCTTATTGCTGAAGAAAAGTTTTTCCGCAGCCGTCCTGTATACAGCGGGCTAGCTGATAGTTGTGGCGTTCCTCAACTAGCAAAAAAATTGAACCAGATTCTAGCACAACATATCAAGGCTGTGCTACCAGGCCTGAGAGCACGCATAAGCACTTCACTAGTTGCTGTTGCAAAGGAGCACGCAAGCTATGGAGAAATCACCGAGTCTAAGGCTGGACAGGGTGCTCTTCTCCTGAATATTCTTTCAAAATACTCTGAAGCTTTCTCATCCATGGTTGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTTTCTGGTGGAGCACGAATTCATTACATTTTTCAATCTATCTTTGTGAGGAGTCTAGAGGAGGTGGATCCATGTGAAGGCTTGACTGATGATGATATTCGTACTGCCATACAGAATGCAACTGGGCCTAAATCAGCATTATTTGTTCCTGAAGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCTCGTCTATTGGATCCTAGTCTTCAGTGTGCCAGGTTTATATATGATGAATTAATAAAGATCAGCCATCGGTGTATGGTTACTGAACTGCAGCGATTCCCTTTCTTGCGGAAGCGCATGGATGAAGTAATAGGGAACTTTTTACGGGAAGGCCTTGAACCCTCAGAAAACATGATTGGACACCTCATAGAAATGGAGATGGATTATATAAACACCTCCCATCCAAATTTTATTGGTGGAAGTAAGGCATTAGAAATGGCAATGCAACATGGCAAGTCTTCTAGGATACTACCTATTTCTAAGCCAAAGGATGGTCTGGATTCTGATAAGGGATCAGCCTCTGAAAGAAGTGTGAAGTCTCGAGGTATTCTTGCCAGACAGGCTAATGGGGTAGTTGCTGATCCGGGTGTTCGTGTTCCTTCGGATGCTGAAAAAGTTGTACCCTCTGGAAACCCTAGCGGATCAAGCTGGGGTATCTCATCCATTTTTGGCGGAGGTGACAGCCGTATGGCTGTGAAGGATAATACAGCTAGTAAACCACATATTGAACCAGTTAACAGCATGGAGCAATCATTTTCTATGATCTATTTGAGAGAGCCACCTCCTGTATTGAGGCCATCTGAGAGCAATTCAGAGACAGAAACTATTGAAATTACAGTAATAAAGTTGCTTTTGAAATCATACTATGATATTGTCAGAAAAAATGTTGAGGATCTTGTCCCCAAAGCTATTATGCACTTCTTGGTAAACAACACCAAGAAAGAGCTGCACAATGTCTTCATTAAAAAGCTATACAGAGACAACCTATTTGAAGAGATGTTGCAAGAACCTGATGAGATAGCCACGAAAAGGAAGCGCTGTCGAGACCTTCTCCGTGCTTATCAGCAGGCTTTTAAGGACTTGGAAGAACTGCCTCTGGAAGCTGAAACAGTTGAAAGAGGATTCAGTTTGCCTGACACAACTGGTTTGCCTAAAATTCATGGGTTACCAACTTCATCAATGTATTCTACAAGCAGTTCTGGAGACTACTATGCGTCTCCTAAGAACCCCAAGTCTAAGAGGTCCTCCCATTCCGGGGAACTTCAATCACCGTTGCATGCTAATTCAGATTCCAATGGAAATGGAAGGCCATTCCCATCCGGGTTCTATCCTGCGGTTGATGCGTGA 2481 0.4639 MADDATTAPPPSSSAATAPLGSSVISLVNRLQDIFSRVGSQSTIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLVQTKRKPDGSEEEYGEFLHLSGKRFYDFSEIRREIQAETDREAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKTPTCLILAVTPANSDLANSDALQMAGVADPEGNRTIGVITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDILMNRSIKDALIAEEKFFRSRPVYSGLADSCGVPQLAKKLNQILAQHIKAVLPGLRARISTSLVAVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVRSLEEVDPCEGLTDDDIRTAIQNATGPKSALFVPEVPFEVLVRRQISRLLDPSLQCARFIYDELIKISHRCMVTELQRFPFLRKRMDEVIGNFLREGLEPSENMIGHLIEMEMDYINTSHPNFIGGSKALEMAMQHGKSSRILPISKPKDGLDSDKGSASERSVKSRGILARQANGVVADPGVRVPSDAEKVVPSGNPSGSSWGISSIFGGGDSRMAVKDNTASKPHIEPVNSMEQSFSMIYLREPPPVLRPSESNSETETIEITVIKLLLKSYYDIVRKNVEDLVPKAIMHFLVNNTKKELHNVFIKKLYRDNLFEEMLQEPDEIATKRKRCRDLLRAYQQAFKDLEELPLEAETVERGFSLPDTTGLPKIHGLPTSSMYSTSSSGDYYASPKNPKSKRSSHSGELQSPLHANSDSNGNGRPFPSGFYPAVDA* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0268 826 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 72 81 IPR019762 -
Amo10g0268 826 Pfam Dynamin family 49 228 IPR045063 -
Amo10g0268 826 Gene3D Dynamin, middle domain 346 590 - -
Amo10g0268 826 Gene3D Dynamin, middle domain 596 722 - -
Amo10g0268 826 Pfam Dynamin central region 237 522 IPR000375 -
Amo10g0268 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 323 IPR027417 -
Amo10g0268 826 MobiDBLite consensus disorder prediction 760 826 - -
Amo10g0268 826 ProSiteProfiles GED domain profile. 656 747 IPR020850 -
Amo10g0268 826 PANTHER DYNAMIN 15 773 IPR022812 -
Amo10g0268 826 CDD DLP_1 44 316 IPR001401 GO:0003924|GO:0005525
Amo10g0268 826 Pfam Dynamin GTPase effector domain 652 741 IPR003130 GO:0003924|GO:0005525
Amo10g0268 826 PANTHER DYNAMIN 3A-LIKE PROTEIN 15 773 - -
Amo10g0268 826 SMART GED_2 651 742 IPR003130 GO:0003924|GO:0005525
Amo10g0268 826 MobiDBLite consensus disorder prediction 532 558 - -
Amo10g0268 826 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 43 316 IPR030381 GO:0005525
Amo10g0268 826 MobiDBLite consensus disorder prediction 764 814 - -
Amo10g0268 826 SMART dynamin_3 21 268 IPR001401 GO:0003924|GO:0005525
Amo10g0268 826 MobiDBLite consensus disorder prediction 540 554 - -
Amo10g0268 826 Gene3D - 22 325 IPR027417 -
Amo10g0268 826 PRINTS Dynamin signature 46 64 IPR022812 -
Amo10g0268 826 PRINTS Dynamin signature 71 88 IPR022812 -
Amo10g0268 826 PRINTS Dynamin signature 217 233 IPR022812 -
Amo10g0268 826 PRINTS Dynamin signature 198 216 IPR022812 -
Amo10g0268 826 PRINTS Dynamin signature 148 165 IPR022812 -
Amo10g0268 826 PRINTS Dynamin signature 240 259 IPR022812 -
Amo10g0268 826 Coils Coil 722 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0268 Amo-Chr10 2700164 2708410 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0268 K17065 - gmx:100807752 1407.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0350 20 4521528 4522654 Amo10g0268 10 2700164 2708410 hybridization