LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g0252	ATGTCTGACATCGAAAATCATGCTTCCCTTCGTGGCCGTTCATCGCCCGATAAGGCGTCTGAGCCTGTCTACTTACATATGTGTTGGATGAGATCATTGAGTGTTGTTAAATTATCTCAGCCAATTTCTCGTGGATCTGCTCATGAAAGTTCACGGATGAGAAGGCAAGATGATGAAAGGAAAACCTTTCATGACCGCCATCGCAGAGACCACAAGGTTGGAAGGTTTATGGGGAGGGGTAAATATGACAATTATAATCGGCACAAGAAAAGTGATTATGATAGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTACTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATACGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCACAGATGGGAACACTTTCTGTAATGCACATTCAACCTATGACACAGCAGACAATTGCAGCATTCTTCAGCCAAGTCATGATTACCATTGGGGGCAATTCTGCTGGAGCAGGCGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAGGAGGCTAGCAATGCAATGGCGGTCCGTAGGCCAACAGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCCGTTGGACTTGCTATTGGTGCTGTTGGTGGAACTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAAATACTAGAATCTTTTGGTACTCTCCATGCTTTTGATTTAGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTCTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGTCATTCTAAAACAGAGCAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTTGGCGGGTCAAATATTCCTTGGGCAGAAAGAGTGCCAACTACAATTGATGAAACTCCCACTAAAGTGTTATGTTTGACAGAGGCTGTTACTTCTGATCAGTTGAGGGATGATGAGGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCCGCAAATTTGGAGCTTTGGTGAATGTTATTATTCCGCGACCGAATCCTGGCGGAGAGCTGCCTCCGGGTATTGGAAAGGTGTTCTTGGAATACTCTGATAACGCTGGTTGTTCCGCCGCAAAAAATGCTCTACATGGTAGGAAATTTGGTGGCAATGTTGTGACTGCCGTTTATTATTCTGAAGAGAAGTATCACAGTATGGACTATGGAGTATGA	1431	0.4368	MSDIENHASLRGRSSPDKASEPVYLHMCWMRSLSVVKLSQPISRGSAHESSRMRRQDDERKTFHDRHRRDHKVGRFMGRGKYDNYNRHKKSDYDSKRTSGFDMAPPTADVTPAVSGQILGTAHTIQGTSQNLSPFGISQMGTLSVMHIQPMTQQTIAAFFSQVMITIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMAVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAIGAVGGTEGLDRIFVGGLSYCFTEEQIRQILESFGTLHAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKIALEVGGSNIPWAERVPTTIDETPTKVLCLTEAVTSDQLRDDEEYEEILEDMRDECRKFGALVNVIIPRPNPGGELPPGIGKVFLEYSDNAGCSAAKNALHGRKFGGNVVTAVYYSEEKYHSMDYGV*	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g0252	476	MobiDBLite	consensus disorder prediction	76	97	-	-
	Amo10g0252	476	CDD	RRM2_U2AF65	248	324	-	-
	Amo10g0252	476	MobiDBLite	consensus disorder prediction	40	106	-	-
	Amo10g0252	476	PANTHER	RNA-BINDING PROTEIN	48	475	-	-
	Amo10g0252	476	PANTHER	U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT	48	475	-	-
	Amo10g0252	476	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	250	319	IPR000504	GO:0003723
	Amo10g0252	476	TIGRFAM	U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor	151	474	IPR006529	GO:0003723\|GO:0005634\|GO:0006397
	Amo10g0252	476	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	248	326	IPR000504	GO:0003723
	Amo10g0252	476	Gene3D	-	138	211	IPR012677	-
	Amo10g0252	476	Gene3D	-	243	344	IPR012677	-
	Amo10g0252	476	SMART	rrm1_1	249	322	IPR000504	GO:0003723
	Amo10g0252	476	SMART	rrm1_1	376	462	IPR000504	GO:0003723
	Amo10g0252	476	MobiDBLite	consensus disorder prediction	48	65	-	-
	Amo10g0252	476	SUPERFAMILY	RNA-binding domain, RBD	119	205	IPR035979	GO:0003676
	Amo10g0252	476	CDD	RRM3_U2AF65	374	462	-	-
	Amo10g0252	476	Gene3D	-	370	474	IPR012677	-
	Amo10g0252	476	SUPERFAMILY	RNA-binding domain, RBD	249	468	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g0252	Amo-Chr10	2561336	2567805	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g0252	250	390	Eukaryotic Initiation Factors Gene Family	AT1G49760	27.660	4.93e-08	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g0252	K12837		-	vvi:100243034	552.747