Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0249 ATGACCATTAAGAGTTGTGGCTGCTTTGGAGCCTCAACTACAAAGAAGAAGAAAACTATAACTTCTCATAGTCCCAATGAAATTGATGGCTATCCCTTAGCCAATGTTAGGCAATTCTCTGATAAGGAACTGAGATTGGCAACTGATAATTATCATTCAAACAGTAAGATAGGAAGAGGAGGCTTTGGAACTGTTTTCCAGGGAACCTTAAAAGATGGAAGACAGGTAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAAGGAGTTCATGAATTCTTGACTGAAATTAAGACATTATCAAATGTTAGACATCCAAACCTTGTTGAATTGGTTGGATTCTGCATTCAAGGACCTAGCCGCACATTAGTCTATGAGTATGTGGAAAATGGCAACCTTGATAGTGCATTACTTGGCACAAGGACTAAGAGAATTAAACTAGATTGGAGAAAAAGATCTGCTATTTGCATAGGTACTGCTAAGGGTCTTGCATTTCTTCATGAGGAAATTGTGCCACATATTGTACATAGAGACATCAAAGCTAGTAATGTACTACTCGACAAAGATTATAATCCGAAAATTGGTGATTTTGGATTGGCAAAGTTATTCCCAGACGACATTACTCACATCAGTACAAAAATTGCTGGAACAACGGGTTACTTAGCACCAGAATATGCATTAGGTGGACAGTTAACCATGAAAGCTGATATATACAGTTTTGGTGTTCTTGTGCTTGAAATCATTAGCGGCAGACGCAGCTCGAGGAGTAACTGGGGAGACTCCAACAAACTCCTATTGGAATGGGCATGGCAACTTCATGAAGAGGGTAAACATTTGGATCTTGTGGATCCAGAGATGGAAGAGTTTCCAGAGGAAGAGGTGATGAAGTACATGAAGGTTGCATTGTTTTGCACACAGTCAGCAGCAAGTAGGAGGCCATTGATGACACAAGTGGTTGACATGCTATCAAAGGAAATCCAGCTGAATGAGAGTCAATTACAACAACCAGGATTCTTCATGGATTCAAATGATGAATCCTCTCGGATCAAGTCAACTTCTGACTCTATAATTCCTAATGTTAGCTCTACTCATAGTTTTACTCAGGTGGCCCCTCGATGA 1116 0.4023 MTIKSCGCFGASTTKKKKTITSHSPNEIDGYPLANVRQFSDKELRLATDNYHSNSKIGRGGFGTVFQGTLKDGRQVAVKTLSVGSKQGVHEFLTEIKTLSNVRHPNLVELVGFCIQGPSRTLVYEYVENGNLDSALLGTRTKRIKLDWRKRSAICIGTAKGLAFLHEEIVPHIVHRDIKASNVLLDKDYNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTMKADIYSFGVLVLEIISGRRSSRSNWGDSNKLLLEWAWQLHEEGKHLDLVDPEMEEFPEEEVMKYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNESQLQQPGFFMDSNDESSRIKSTSDSIIPNVSSTHSFTQVAPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0249 371 Pfam Protein tyrosine and serine/threonine kinase 54 321 IPR001245 GO:0004672|GO:0006468
Amo10g0249 371 MobiDBLite consensus disorder prediction 339 371 - -
Amo10g0249 371 SMART serkin_6 51 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0249 371 ProSiteProfiles Protein kinase domain profile. 51 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0249 371 PANTHER - 2 363 - -
Amo10g0249 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 363 - -
Amo10g0249 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Amo10g0249 371 Gene3D Transferase(Phosphotransferase) domain 1 127 344 - -
Amo10g0249 371 Gene3D Phosphorylase Kinase; domain 1 22 126 - -
Amo10g0249 371 SUPERFAMILY Protein kinase-like (PK-like) 35 354 IPR011009 -
Amo10g0249 371 PIRSF ILK 9 334 - -
Amo10g0249 371 CDD STKc_IRAK 57 323 - -
Amo10g0249 371 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0249 Amo-Chr10 2542685 2545876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0249 39 370 Receptor kinase-like Gene Family AT1G56120 48.795 1.82e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo10g0249 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0249 - - gmx:100788143 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4045 13 133380134 133384570 Amo10g0249 10 2542685 2545876 PCT
Amo10g0249 10 2542685 2545876 Amo13g4045 13 133380134 133384570 PCT