Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0239 ATGAGCAAAGCAGGTGATATTCCCAAAACAGAATCTGAAGAGGCCTCGGCTTCTCAGATTAGAACTTTGACGAGCTTGCAATCAACAATTTCCTCACTTGAATTGATAAATAGTTTGAGGAGGAAGAGGGATTTGATGAGCCTCTTGTGTAGTTACCCACTGGACATGAGAGTGATCTTTGATGATTTCATACCAAAGGCATATTGTGAGAGGAAGCTGCTGCTTAAGCTAGAAGGACTTCTTCCAAAAGCGATAATAAGGGATGCTGAAAATGGTGACAGGTCCGGCTCCAACTTCATCTTTGGTGATGCCAACTCGGACTTAATTCCAGAAGCTATTCTCGATATGGCTGCTGATCTTGCTGTCCACCAACTCATGCAAACATTGATTTCCATTTGTAAAAGCAAAAGTCCAAAGCATGCAAAATGCATCAGGTTATCAACAAGAAATGATGTTGAAAAGAGAACAGTCATGGAAAAAGTAACTGCAGCCTTGAATGACAAGCACCATTCACTTGACATTCTTAATTCATTTCATGGACATCTGACTATTGATGCCACCGGATATCCAACTTCAGAAGCAGAGAAGGAACTTAAGCAACATATCTGTCAACTACTTCAGCTTTCAGCTATTAAATACGATGACATCTTGTGCACCCTACAGATTGAAGACGAGATGTCAAGAAGCAGGTATCTAGTAATTCTTGTAGATAGGGATGGTGAGGAAATTGTTGATCCACAAAAAGTGGGACTTTATGGTACTCTACTGACAGGAGTTTTGGTATTCATTACCACTGACTCACCATCATCTCAACAGGCTAAAGAAGGAGGATTGAAGGATGGGTTAGTGAACTTGGAAATACGGACAAAAGAACATTTGCTGCCATGGGTGGTCTTCTGTGACACTGCGGGGAAGGAGTTTGTATATTCATCAGGTGCTATCCTGACAACTGCAGTGCGCATAGTTGAGGAGTGTCGTAGCCACCTTCATGCAATTCTCCTTGTGGCAAAGTGGTTGAAGAATCATCAAGATGTCAGAATGTGGGAACTTGCTCTCCACAAATTACAATTTACTAATCCTTCACACGATGTCATCAATTTTCATGGTTTGAACAGCATCATGATAAACACATTCCTAAACTTAATATGGGATGGCATGAATAAGACACAACAGAATTGCCTACTGAGCTGTTCAGTCATTCCCAAAATTAGAGATGGCATGGTTGATCATGAATTGAAGAATCACTGGATGTCTTCTCTTTTTGTGGATGCGGGAGAAACAGAAAAGAACCTAAGACAGCTTGTGGAAAATTCCATCTTTCTTCAATTCGACGGTGTTGGAGGCAGGTATATTTGGTTACCAGAAGAAACCTATCAAATGTTAGAATGGATATACACCTTAGACCCATTGTTCATAGAGAAATCGAACCTAGGATTGACTGAACCACCCAACACTGACAAATGGCATAATGCTGTACGAATTGAATTAGCAGGCAATAAAATCTCTGAGCTACCAGAGTCCCCAGATTGTCTGCAACTCAAAGTTTTGATGCTGCAACGCAATGCTGATTTGACAAAAATACCATCTTCATTTTTTTATCACATGCCTCTGCTTTGCATCCTGAACTTATCCTACACTAGTGTAAGAGAACTGCCATGTTCCTTGTTCTTTCTGAAGCACCTTAGAGAACTATATCTGAAAGGTTGTGAATGCTTCATGAAATTGCCACCTGAAATCGGAAATTTGGAGAAGCTTGAGAAGCTTGATCTTGATGAGACTCAGATCACACATCTGCCAAAAGAGGTCCAGAAGTTAACAAATATTCAAAGCTTGACCCTCTGCTTTTATGAATATCATGTTAAGAAGAACGTGCCATATTCCTGCTCAACGATTATTCCGTCTGGCGTGCTACCTAAACTCGAGAGGTTGGAACATTTGTGTATTGGTGTAAACCCTGATGATGCGCGGTGGAATAAAAATGTGCAAGTCATTCTACCAGAAATATTGGGATTAGAGTGTTTACAAACTCTCAGCATTTATATCCCACAACTGGAACTTTTGAAGCTCATACCGGCCCGCATTTTTGAACTTGATTTCAGGTTCATTGTTGGTCATCATATGCAGCGGATTATATCAAGCATGCCACCTGCCACTGATGTGGAATTTAAACAAAGTAACCGCAGCTTAAAATTTGTAAAAGGTGAGGGTGTCACAGATGAAATCAAAATGCTACTTAGACACAGCAAAGCTCTTTTCTTGGATCGGCATTTCACCTTAAAGAGTCTAACTGAATTCGAAATGAAAAATTTAGAGCAACTACGTGTGTGCATATTGACAGAATGCAAAGAAATGCAAACAATTGGTGGAGGAGGTGACTTAGACGATAATATTGATATGCTTCCGCATCTGCTATTCTTAAGTATATTCCAGATGAAGAATCTAAGAAGCATCTGGGAAGGCTCAACTCCTCCACCCTGCTTATTTGGTATGTTGCAGTCTTTGTCATTGCAAAGTTGTCCCAAGTTAACGACTCTCTTCTCTGTGGATTTTGTGGGAAATCTTTCTTTGTTGAAGGAGCTCATGGTGAAAGACTGTCCCAAATTAAGTACCCTAATAAGCTATAAGCCTTTTTCTTATACATGTAACCCCAGTGCCGATACTTTCCTCCCTAAATTGAGCAAGTTATGGCTTCTCCATCTTCCTGAATTGACCAGCATTTCGAGTGGGTTGGGCATTGGACCTGGTTTAAAAGAAGTAGGATTTTATGGTTGCCCAAAGATGCGTAATCTTTCAAGGAAGGAATTGGTAAGCAGAGCACTAACTGTAATCAAGGGACACACAAACTGGTGGAAGGCGCTAGAAGGTCGACCGTCTACATTTGATCAGGTTTTTTCCCCAATCCATGAAGAGGCGGACTTGATGACTCAATTAGGTACGCCATTACAGCACACGGGGTTTGCAACTCCAGCATCAAATTCACCAGCTTCAAGTGGCAAGGGCCTCAAAAACAAGAAGGGTTCCAGGTTCTCCAACCTTAGAATATCAATACCTCAACTCCGATCTGCCGTTCTTTCAAATAAATTCTCCAGAGAGATTCGATACAGAGGGATTTTGGAGAGGCCCTGGGGCCGTTACACGTCCCAGGTTTGCGAACCTGGCAAGAACAGCATCTGGCTCGGCACCTTTGACCCTGCTGAAGAGGCCGCAGGTGCCGACGACGCAACCGCACGTGAGTTCCCCGGCCATAAGGCCAAAACCAATTTGCCCAGCCAGAGTAGTATCCTCTACTCCAACACCTTCGATGCCGCCGAGGAGTCTGCAAATTCTGCAAAGGTTACACATCCCTATGACAAGGCGACACGTGAGTTCATGAATCCTCAGCGGTATGCTTTTTAA 3396 0.422 MSKAGDIPKTESEEASASQIRTLTSLQSTISSLELINSLRRKRDLMSLLCSYPLDMRVIFDDFIPKAYCERKLLLKLEGLLPKAIIRDAENGDRSGSNFIFGDANSDLIPEAILDMAADLAVHQLMQTLISICKSKSPKHAKCIRLSTRNDVEKRTVMEKVTAALNDKHHSLDILNSFHGHLTIDATGYPTSEAEKELKQHICQLLQLSAIKYDDILCTLQIEDEMSRSRYLVILVDRDGEEIVDPQKVGLYGTLLTGVLVFITTDSPSSQQAKEGGLKDGLVNLEIRTKEHLLPWVVFCDTAGKEFVYSSGAILTTAVRIVEECRSHLHAILLVAKWLKNHQDVRMWELALHKLQFTNPSHDVINFHGLNSIMINTFLNLIWDGMNKTQQNCLLSCSVIPKIRDGMVDHELKNHWMSSLFVDAGETEKNLRQLVENSIFLQFDGVGGRYIWLPEETYQMLEWIYTLDPLFIEKSNLGLTEPPNTDKWHNAVRIELAGNKISELPESPDCLQLKVLMLQRNADLTKIPSSFFYHMPLLCILNLSYTSVRELPCSLFFLKHLRELYLKGCECFMKLPPEIGNLEKLEKLDLDETQITHLPKEVQKLTNIQSLTLCFYEYHVKKNVPYSCSTIIPSGVLPKLERLEHLCIGVNPDDARWNKNVQVILPEILGLECLQTLSIYIPQLELLKLIPARIFELDFRFIVGHHMQRIISSMPPATDVEFKQSNRSLKFVKGEGVTDEIKMLLRHSKALFLDRHFTLKSLTEFEMKNLEQLRVCILTECKEMQTIGGGGDLDDNIDMLPHLLFLSIFQMKNLRSIWEGSTPPPCLFGMLQSLSLQSCPKLTTLFSVDFVGNLSLLKELMVKDCPKLSTLISYKPFSYTCNPSADTFLPKLSKLWLLHLPELTSISSGLGIGPGLKEVGFYGCPKMRNLSRKELVSRALTVIKGHTNWWKALEGRPSTFDQVFSPIHEEADLMTQLGTPLQHTGFATPASNSPASSGKGLKNKKGSRFSNLRISIPQLRSAVLSNKFSREIRYRGILERPWGRYTSQVCEPGKNSIWLGTFDPAEEAAGADDATAREFPGHKAKTNLPSQSSILYSNTFDAAEESANSAKVTHPYDKATREFMNPQRYAF* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0239 1131 Gene3D Ribonuclease Inhibitor 455 700 IPR032675 -
Amo10g0239 1131 Gene3D AP2/ERF domain 1032 1092 IPR036955 GO:0003700|GO:0006355
Amo10g0239 1131 PRINTS Ethylene responsive element binding protein signature 1034 1045 IPR001471 GO:0003700|GO:0006355
Amo10g0239 1131 PRINTS Ethylene responsive element binding protein signature 1055 1071 IPR001471 GO:0003700|GO:0006355
Amo10g0239 1131 Gene3D Ribonuclease Inhibitor 737 875 IPR032675 -
Amo10g0239 1131 ProSiteProfiles AP2/ERF domain profile. 1033 1089 IPR001471 GO:0003700|GO:0006355
Amo10g0239 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 397 IPR027417 -
Amo10g0239 1131 SUPERFAMILY L domain-like 475 928 - -
Amo10g0239 1131 PANTHER PROTEIN LAP1-LIKE 345 964 - -
Amo10g0239 1131 SUPERFAMILY DNA-binding domain 1033 1089 IPR016177 GO:0003677
Amo10g0239 1131 Pfam Leucine rich repeat 512 569 IPR001611 GO:0005515
Amo10g0239 1131 PANTHER - 345 964 - -
Amo10g0239 1131 SMART rav1_2 1033 1095 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0239 Amo-Chr10 2445697 2450880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0239 1029 1090 AP2-EREBP Transcription Factor Family AT3G15210 60.317 2.94e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0239 - - aip:107622712 1462.2