Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0235 ATGAGCAAAGCAGGTGATTTACCTAAAATGAAGTTAGAGGCTGGTGAGTTTCCCAAAATGGAAGTGAAGCCATTTAATATCGTTAAAACGGAGATGAATGAATTTTCGAAAAAAGAGCCATCTGGATTTCCCAAAATGGAGTTGGAAGCAGGTGATTTTTCCATAACAGAGGTGAAGCCATTCAGTATCCTTAAAACAGAGCCAGGAGAGTTTCCTAGAAAGGAGCTGTTAGATTTCTCCTTAACGGAGAAATTTTTTTTTGACAAAACAGAATCTGAAGGGGCCTCGGCTTCTCAGACTAGTACTTTGACAAGCTTGAAATCATCAATTTCCTCACCTGAATCAGAAAATAGTTTGAGGAGGAAGAGGGATTTGCTGAGCCTCTTGTCTAGTTACTCTGTGAATGCGAGAATGATATTTCAAGATTTCACATCAAAGTCATATGATGAGAGGCAGCTGCCGCTTAATCTACGAGGACTTCTTCCAAAGGAGATAATAAGGGATGCTGAAAATGGTGATAGGTCCTGGTCCCGGTCCAGCTCTGGCTTCGGTGAGGCCGACTTGGACTTCATTCCAGAAGCTATTCTCAATTTGGCTTCTGATCTTGCTGTCCACCAACTCATCCAGACGTTGATTTCCTTTTCTAAAAATCAAAATCTAAACTATATAAAATACATCAGATTGTCAACCAGAAGCGACATTGAAAAAAGAGCAGTCATGGCGAAAGTAGCAGCAGCCTTGAATGACAAGCATAATGTGCTTGACATTCTGAGTTCATTTCGTGGAACTCTTAGTATTGAAGCCTCAAATTATCCAACTACAGGAGGAGAGAAGGAACTTCGAAAACATGTTTGTCAGCTACTTCAGCTTTCAATGATTGAAGACGATGAAGTTTTGTGCACCAGACACATTGAGGAAGAGATGTCAAGCAGCAGGTACCTAGTAATTCTTGCAGACAGGGATGGTGAGGAAATTGTCGATCTACAAAGAGTGGGATTTTGTAAGAGTCTACTGTCAGGAGTTTTGGTACTCATTACCACTGATTCACCAGCACCTCAACATGCTAAAGAAGAAGGATTGATGGAAGCCATAGTGGACTTGGAAATTCGGACTAAAGAACATTTGCTGCCATGGGTGGTCTTCTGTCGCAATGCGGGGAAGGATTTTGTATATTCATCAAGTGCCATCCTGACAACTGCAGTGCGCATAGTTGAGGAGTGTCGAAGCCACCTTCACGCAATTCTCCTTGTGGCAAAGTGGTTGAAGAATCATCAAGATGTCAGAAAGTGGGAACTTGCTCTCCTCAAATTGCAATCTGCTAATCCTTCACAAGATATCCACAATTTTCATGGTTTAAACGAGATCATGGTTAACACATTCCTAAACTTAATATGGGATGGCATGAATAAGACACAACAGAATTGCCTACTGAGCTGTATAGTCATCCCTAAAATTAGAGATGGCATGGTTGATCATGAATTGATGAATCACTGGATGTCTTCTCTCTTTGTGGATGCTGGAGAAACAGAAAAGAACCTAAGACAACTTGTAGAAAATTCTGTCTTTCTTCAATTTGATGGTGTTGGAGGCGGGTATACTTGGTTACCAGAAGAAACCTATCAAATGTTAGAACGGCTATACAGCTCATACCCATTGTTCATAGAGAAATCAAACCTAGGGTTGACTGAACCACCCAACCCTGACAAATGGAATAATGCCTTACGAATTGAATTAGCAGGCAATAAAATCTCTGAGTTACCAAAGTCCCCAGCTTGTCTGGAACTCAAAGTTTTGATGCTGCAAAGCAATGCTGATTTGACAAAAATACCATCTTCATTTTTTGGTCAGATGCCACTGCTTTGCATCCTGAACTTATCCTACACTAGTGTAAGAGAACTGCCATCTTCATTGTTTTTTCTGGAGCAGCTTAGAGAACTGTATCTGAAAGGTTGTGAATGCTTCATGAAGTTACCACCTGAAATTGGAAATTTGGAGAAGCTTGAGAAGCTTGATCTTGATGAGACTCAGATCACACATCTGCCAAAAGAGGTCCAGAAGTTAACCAATATGCAAAGTTTGACCCTCTGCTTTTATGAATATCGTGTCAAGAAGAACATGCCATATTCTTGCTCAACAATTATTCCTTCTGGCGTGCTATCTAAACTCAAGAGGTTGGAACATTTGTGTATTGGTGTAAACCCTGATGATGAGCGGTGGGATGAGAATGTGCAAGTTATTCTACCAGAAATATTGGGATTAGAGTGTTTGCAAACTCTCAGTATGTATATCCCACAACCGGAACTTTTGAAGCTCATACCGGCCCACATATTTGAGCTTGATTTCAGGTTCATTGTTGGTCGTCATATGCAGCGGATTATATCAAGCATACCACCTGCCACTGATGTGAAATTTAAACAAAGTGACTGCAGCTTAAAGTTTGTAAAAGGTGAGGGTGTCCCAGATGAAATCAAAACGGTTCTTAGACACAGCAAGGCGCTTTTCTTGGATAGGCATTTCACCTTGAAGAGTCTTTCTGAATTTGAAATGAAAAATTTAGAGCAACTAAGGGTGTGCATATTGGCAGAATGCAAAGAAATGCAGACATGTGGAGGTGGAGCAAAAGATGAAGATGACATGCTTCCGCATTTGCTATTCTTGAGTATATTCCACATGAAGAATCTGAGAAGCATATGGGAAGGCCCAACTTCCCCTCACTCCTCATTTGGTATGTTACAGTCTTTGTCATTGCAAAGTTGTCCCAAGTTGGTGACTCTCTTCTCTTTGGACTTTCTGGGAAATCTTTCTTTGTTGAAGAAACTTATAGTGAAGGACTGCCCCAAATTAAGTACATTGATAAGTCATGAATCATCCAAGCGCAATGCACATGCTTTCCTCCCTAAATTGAGCAAGTTATTGCTTCTCCATCTTCCTGAATTGTCCAGCATTTCAAATGGGTTGCAAATTGGGCCTGGTTTAAAAGAAATAGCATTTTATGACTGTCCAAAGCTGCACAGTCTTTCAAGGAAGGAATTGGTAAGCAAAGAACTAACGGCAATAAAAGGAGAAACCAACTGGTGGAAGTCACTAGAAGGTCGAACGCCTAATTTTAATCAAATTTTTTCCCCAATTAATGAAGAAGCTGACTTGATGACTCAGTTAGGTATATGTGACGATGACGGTATTGATAATGGTCCAGGTGACTCAGTAGGTAAGCCGTCACAGCCTACAGGGATTGCAACTTGTGTATCAAATTCACCGACTAGGAGAGGCAAATATAGAAGGCGTAGAATCTCAAAAACTTGGGAGGTAGAGACAAGTTATCTCACTGATGATGGACACACGTGGAGAAAATATGGTCAGAAAGCGTTGCTCAACAATAAGTACCCGAGAAATTATTACAGATGCACTCATAAGTATGATCAAGGATGCCTGGCCACAAAGCATGTTCAACAGATTGGCGAGGACCCTCCTTTATATAAAACAGTTTACTCTGGGCAACATACATGCCGCCGTAGACTGTAG 3522 0.4091 MSKAGDLPKMKLEAGEFPKMEVKPFNIVKTEMNEFSKKEPSGFPKMELEAGDFSITEVKPFSILKTEPGEFPRKELLDFSLTEKFFFDKTESEGASASQTSTLTSLKSSISSPESENSLRRKRDLLSLLSSYSVNARMIFQDFTSKSYDERQLPLNLRGLLPKEIIRDAENGDRSWSRSSSGFGEADLDFIPEAILNLASDLAVHQLIQTLISFSKNQNLNYIKYIRLSTRSDIEKRAVMAKVAAALNDKHNVLDILSSFRGTLSIEASNYPTTGGEKELRKHVCQLLQLSMIEDDEVLCTRHIEEEMSSSRYLVILADRDGEEIVDLQRVGFCKSLLSGVLVLITTDSPAPQHAKEEGLMEAIVDLEIRTKEHLLPWVVFCRNAGKDFVYSSSAILTTAVRIVEECRSHLHAILLVAKWLKNHQDVRKWELALLKLQSANPSQDIHNFHGLNEIMVNTFLNLIWDGMNKTQQNCLLSCIVIPKIRDGMVDHELMNHWMSSLFVDAGETEKNLRQLVENSVFLQFDGVGGGYTWLPEETYQMLERLYSSYPLFIEKSNLGLTEPPNPDKWNNALRIELAGNKISELPKSPACLELKVLMLQSNADLTKIPSSFFGQMPLLCILNLSYTSVRELPSSLFFLEQLRELYLKGCECFMKLPPEIGNLEKLEKLDLDETQITHLPKEVQKLTNMQSLTLCFYEYRVKKNMPYSCSTIIPSGVLSKLKRLEHLCIGVNPDDERWDENVQVILPEILGLECLQTLSMYIPQPELLKLIPAHIFELDFRFIVGRHMQRIISSIPPATDVKFKQSDCSLKFVKGEGVPDEIKTVLRHSKALFLDRHFTLKSLSEFEMKNLEQLRVCILAECKEMQTCGGGAKDEDDMLPHLLFLSIFHMKNLRSIWEGPTSPHSSFGMLQSLSLQSCPKLVTLFSLDFLGNLSLLKKLIVKDCPKLSTLISHESSKRNAHAFLPKLSKLLLLHLPELSSISNGLQIGPGLKEIAFYDCPKLHSLSRKELVSKELTAIKGETNWWKSLEGRTPNFNQIFSPINEEADLMTQLGICDDDGIDNGPGDSVGKPSQPTGIATCVSNSPTRRGKYRRRRISKTWEVETSYLTDDGHTWRKYGQKALLNNKYPRNYYRCTHKYDQGCLATKHVQQIGEDPPLYKTVYSGQHTCRRRL* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0235 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 479 IPR027417 -
Amo10g0235 1173 PANTHER PROTEIN LAP1-LIKE 425 1039 - -
Amo10g0235 1173 Pfam WRKY DNA -binding domain 1110 1170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g0235 1173 ProSiteProfiles WRKY domain profile. 1104 1167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g0235 1173 SMART WRKY_cls 1109 1171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g0235 1173 Gene3D Ribonuclease Inhibitor 810 1020 IPR032675 -
Amo10g0235 1173 Gene3D WRKY domain 1097 1171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g0235 1173 SUPERFAMILY L domain-like 557 1007 - -
Amo10g0235 1173 SUPERFAMILY WRKY DNA-binding domain 1104 1170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g0235 1173 Pfam Leucine rich repeat 594 651 IPR001611 GO:0005515
Amo10g0235 1173 SMART LRR_typ_2 617 640 IPR003591 -
Amo10g0235 1173 SMART LRR_typ_2 664 686 IPR003591 -
Amo10g0235 1173 PANTHER - 425 1039 - -
Amo10g0235 1173 Gene3D Ribonuclease Inhibitor 536 777 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0235 Amo-Chr10 2389183 2394000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0235 1039 1169 WRKY Transcription Factor Family AT3G56400 40.741 2.05e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo10g0235 WRKY 7.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0235 - - aip:107622712 2229.14