Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0225 ATGTCCTTAACAGGGCGTCCTCGAGTGATCGTGAATGGAGTCCGAAGAACAAGAAGTTTCCACTGTTTCTGGTGCCTTAACTGCCAACGAACAGTGAGAATACCTGCTACCTATCCAAACGGTTCTCTCTGCCCTTATTGCTTCAATAGACTCCGTTACGAGCTTGACATAACAAGGCCAACAAGGTTTCTCTTCACCAACAACAACAATTTGGAACCTTCACCAGCTTCTCAGCTATTGAATGGCCTCGCTCTCATTCTCCATCCACCTCAACACAATCATAACCGATGGGAAGGACAAGAAGAAGAAACACTAGAAAATCAACAAGATCCACGAGCTTGGATTACTCTCAGATTCGTGAGGCCAAATAACAACGGTCCACAGAGACTTATGCCTCCACCGCTGCAGCCGCAACCGCAAGCCAACAATAACAGCGATCCGATTGATGAATTCATTCAAAATTTGGTCGAGAATAATAACAACCGGCCGGGCCCGCCTCCGGCTTCGTCTTCGGCCATCGCAGCGTTGCCGGTGGTGAGGCTGGCGCGAGAACAATTGGCTAGTGATCCGAACTGTGCAATATGCAAAGATGAATTTGAGGTAGATGGAGAAGTGAGGGAGTTGCCGTGCAAGCATTTCTACCATTGCGATTGCATTCTGCCATGGCTGCGCATCCATAATACCTGCCCTGTCTGCCGCTATGAGCTTCCTCCTGTTGCGGCGAGTGAGAATCAGAATAATAATCATAATCATAATATTAATAATAATGAGCAGCAGAGTTTTATTAGCTTCAACTGGATTTTGAGACAAATTGCTTCGATCAGTAGCCCCATTCGTGCTATCTTGGATTATTGGACTCACAGACATTACTCTAATCACCAAGATAACAATGCTCCTGCTCATGATGATGGAGGTACTATTAGCTCTTGGTGGAGAGAATTGTTCATCTTATAG 954 0.4591 MSLTGRPRVIVNGVRRTRSFHCFWCLNCQRTVRIPATYPNGSLCPYCFNRLRYELDITRPTRFLFTNNNNLEPSPASQLLNGLALILHPPQHNHNRWEGQEEETLENQQDPRAWITLRFVRPNNNGPQRLMPPPLQPQPQANNNSDPIDEFIQNLVENNNNRPGPPPASSSAIAALPVVRLAREQLASDPNCAICKDEFEVDGEVRELPCKHFYHCDCILPWLRIHNTCPVCRYELPPVAASENQNNNHNHNINNNEQQSFISFNWILRQIASISSPIRAILDYWTHRHYSNHQDNNAPAHDDGGTISSWWRELFIL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0225 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 240 IPR013083 -
Amo10g0225 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 22 271 - -
Amo10g0225 317 Pfam Ring finger domain 191 233 IPR001841 -
Amo10g0225 317 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Amo10g0225 317 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 22 271 - -
Amo10g0225 317 Coils Coil 239 259 - -
Amo10g0225 317 MobiDBLite consensus disorder prediction 125 147 - -
Amo10g0225 317 CDD RING-H2_RNF126_like 192 233 - -
Amo10g0225 317 SUPERFAMILY RING/U-box 173 244 - -
Amo10g0225 317 SMART ring_2 192 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0225 Amo-Chr10 2334291 2335330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0225 1 287 C3H Transcription Factor Family AT1G68180 32.534 2.44e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0225 K11982 - gmx:100793656 296.204