Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0206 ATGACGAGTTTCGCTTTCTTCCAGCGTCTTTCTAAATCCTTCCAAGACCATCCCTCGCATCTTAAGCTCATACTCCTCTGCACCACCGTAACTGGTGGTGGCCTTTTGGCTTACAGTGATGCTGCTTCTTCTGAAGTGCCGGTTACCGAGAAGAAAAAGGTGGTGGTTCTGGGAACTGGTTGGGCGGGGACTAGCTTCTTGAAGAATCTAAACAATCCGAGATATGAGGTGCAGGTGGTTTCGCCGCGTAACTACTTTGCCTTCACTCCGCTGCTGCCTAGTGTAACGTGCGGGACCGTCGAAGCTCGAAGCATTGTTGAACCCGTTCGCAATATTGCTAAGAAGAAGGAAGTGGACGTTCTATTCAGTGAAGCAGAGTGTGTCAAGATTGATGCTGAAAACAGAAAAATATATTGTCGATCTAATATAAACAACAATTTGAATGGGAAAGAAGAATTTGTCGTGGACTATGACTATCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAATACTCCAGGAGTTGTGGAGAATTGCCATTTCTTGAAGGAGGTTGAAGATGCTCAGAAGATTAGAAGAACTGTTATTGACTGCTTTGAGAGGGCAAATTTACCCAATTTAAGTGAAGAAGAGAAGAAGCGAATTCTTCATTTTGCTATTGTTGGAGGTGGCCCAACTGGGGTAGAGTTTGCCGCCTCACTTCATGACTTTGTCAATGAGGATATGATCAGATTGTATCCGGGAATTAAAGATTTGGTTAAAATTACTCTTCTGGAGGCAGGGGATCATATATTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTCAAAGAGATGGAATTGATGTGAAAACAGGGTCCATGGTTGTGAAGGTAACCGATAAGGAGATTTCCACTAAAGAACTGAAAAATGGAGGAGAAATTAAGACAATTCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGCACTCGTCCATTTATTAAAGATTTCATGGCACAAATTGGTCAGGCTAGCAGGCGTGCTTTAGCTACTGATGAATGGTTGAGAGTCGAGGGTTGCAACAATGTGTATGCACTCGGTGATTGTGCTACCATCAACCAGCGGAAAGTCATGGAAGATATTGCTGCGATCTTTAAGAAGGCTGACAAAAACAATTCAGGAACACTAACGGTGAAAGAATTTCAAGAGGCCATGAATGACATTTGCGAAAGATACCCTCAGCTGGAGTTGTATCTCAAGAATAACCAAATGCGCAACATCGCTGATCTATTGAAGGAAGCCAAAGGAGACGTTAAGAAAGAATCAATTGAACTCAATATCGAGGAACTCAAAACAGCACTCTCCAAAGTGGATTCCCAGATGAAATTCCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGCACTTACCTAGCCAAGTGTTTCAACCGGATGGAAGAGTGTGAAAAGAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCATTGGGAGGAGAACAGACAGCTGCCCAGCTTCCCGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTATGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGGGCCTTGGTAGTTACAGACTGGACAAGACGGTTTATATTTGGAAGAGACTCAAGTCGCATATAG 1734 0.4418 MTSFAFFQRLSKSFQDHPSHLKLILLCTTVTGGGLLAYSDAASSEVPVTEKKKVVVLGTGWAGTSFLKNLNNPRYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIAKKKEVDVLFSEAECVKIDAENRKIYCRSNINNNLNGKEEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPNLSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDMIRLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVTDKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMAQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKNNSGTLTVKEFQEAMNDICERYPQLELYLKNNQMRNIADLLKEAKGDVKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0206 577 Coils Coil 439 459 - -
Amo10g0206 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Amo10g0206 577 PANTHER NADH DEHYDROGENASE 4 577 IPR045024 GO:0003954|GO:0006116
Amo10g0206 577 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Amo10g0206 577 Gene3D - 44 422 - -
Amo10g0206 577 Gene3D - 423 576 - -
Amo10g0206 577 Pfam EF hand 380 406 IPR002048 GO:0005509
Amo10g0206 577 PANTHER NAD(P)H DEHYDROGENASE B2 4 577 - -
Amo10g0206 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 378 IPR023753 GO:0016491
Amo10g0206 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
Amo10g0206 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 54 73 - -
Amo10g0206 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Amo10g0206 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Amo10g0206 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Amo10g0206 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Amo10g0206 577 SMART efh_1 379 407 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0206 Amo-Chr10 2109252 2113202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0206 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 74.271 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0206 K03885 - gmx:100802661 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0468 20 5925582 5929621 Amo10g0206 10 2109252 2113202 hybridization
Amo13g4374 13 139626674 139631685 Amo10g0206 10 2109252 2113202 PCT
Amo10g0206 10 2109252 2113202 Amo13g4374 13 139626674 139631685 PCT