Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0202 ATGCAAGGTTGCATTGGTGTGGTCCATTTATCTATCTACAACTCTCTGATCATCAAGGCGAAGCAGGAATTCAATGCGAGTGAGGATTCCACAACCACCGTCGTTTCGCCGGAAAATGGCTTTGTTGCACCACAACCACTGACAACTCCAGCTATTATGGGCTACGATGAACAACTCAAACCGTGCCGGAATAACTTGCCGGAATCCTCCAATCCCCGGCGAGTTGTCAACCTTATTTCATCCCTAATCTCCCTCTCCCTCTCGATTAGGGTCTTCGCCGGAAAATGGCAACTGATTCGCAACAAGCTCGAGGAGCTGTACTCCGGTCTAGTCGGAGCCGACGACGACCCTTCACTCTCCGGCGTTCTCCCTGCGATCCTCTCCACCGCGGAGGAGTGTTCCGACCTAGCTCGCCGCTGCACCGATCTGACATACAGCGGGAAGCTTCTTATGCAGAGCGACTTAGAGGTGGTTTTCGCGAAGCTCCATTGCCATGTGAAGAAGCTGTCTGAGATGTACACGAAGGGTGTTCTCACACACAGCTACGCTCTGGTGGTCTCGAAGCCTGGACTTGGAGCTTCCAAAGAGGACATGAGGTTCTTCGTGAGGGACCTACTCACCAGAATGAAGGTTGGCGATGTTAGTATGAAGAAGCAGGCATTGATCAACCTCCACGAAGTTGCTTCCGAAGACGACAAGTACGTGAAGGTGATTGTTGAAGTCGGTGACGTTGTTCATGTTCTGGTTGATTTTCTAGGGTCCTCTGAGTTGGAGATTCAACAAGAGTCTGCAAAGGTAGTTTCTTTGATTGCGGGGTTTGATTCTTATAAAGGAGTTCTTGTTGGCGCTGGCGTTGTTGCGCCTTTGGTTAAGGTTTTGGAGTGTTCAAGTGAGACTGGCAAAGTTGCTGCTGCCTTGTGTCTGCAGAGTTTGACTGAGAATTCCGATAATGCTTGGTCGGTTTCCGCTCACGGCGGCGTCACGGCGTTGTTGAAGATTTGTGGCGGTGTAGATTGCAGAGCAGAATTGGTTTGTCCTGCTTGTGGAGTTCTGAGGAATCTGGTTGGTGTTGAAGAGATTAAGAGGTTCATGGTTGATGAAGGTGCGGTTTCAAGCTTCATTAGGCTTATGAGGTCAAGGGACGAAGCGATTCAGGTGAGTTCCATTGAGTTTCTTCAGAGTATTGCATCCGGAGATGAGTCATTGGTTAAGCAGATTGTTGTTAGAGAAGGCGGGGTTCGTGTTTTGCTGCGACTTTTGGATCCTAAATGGCCTTGTTCTTCCAAAACAAGAGAGGTAGTGATGAGGGTTATTGAGAATTTGTTCTTCTCTTGGTCTAGTTGTGTCACTATTTTGATGAGCTATGGTTTTGTGGATCAATTGATGTACTATATTCGAAACGGCGACGTTTCTGTTCAAGAATTGGCTCTCAAAGTTGCGTTTAGATTGTGTGGAACATGTGAAGATGCTAAGAAAGCTCTAGGTGATGCTGGATTCATGGCAGATCTTGTTAAGTTTCTAAATGTGAAATCATTCGAGGTTCGAGAAATGGCGGCCGAGGCACTCTCCGGGATGGTTATGGTTGCCAAGAACAGGAAGAGGTTTGTGCAAGATGATGAAAGCATTGCTCTTCTTCTGCAGTTGTTGGATCCAGAGGAGGGGAATTCAGGTAACAACAAGTTCTTGATCTCTGTATTGATGTCATTGACGCATTGCAACAGTGGGAGGAAGAAGATTGTGAGTTCTGGGTATGCTAAGAACATAGAGAGGCTTGCATCAGAATCTCAAGTTTCTTCTGCTGAAGCAAAGAGACTTGTCAGGAAGCTATCCACCAATACATTCCGCACCTTGCTCAGTGGAATCTGGCACCACCACCACTCTTGA 1884 0.4756 MQGCIGVVHLSIYNSLIIKAKQEFNASEDSTTTVVSPENGFVAPQPLTTPAIMGYDEQLKPCRNNLPESSNPRRVVNLISSLISLSLSIRVFAGKWQLIRNKLEELYSGLVGADDDPSLSGVLPAILSTAEECSDLARRCTDLTYSGKLLMQSDLEVVFAKLHCHVKKLSEMYTKGVLTHSYALVVSKPGLGASKEDMRFFVRDLLTRMKVGDVSMKKQALINLHEVASEDDKYVKVIVEVGDVVHVLVDFLGSSELEIQQESAKVVSLIAGFDSYKGVLVGAGVVAPLVKVLECSSETGKVAAALCLQSLTENSDNAWSVSAHGGVTALLKICGGVDCRAELVCPACGVLRNLVGVEEIKRFMVDEGAVSSFIRLMRSRDEAIQVSSIEFLQSIASGDESLVKQIVVREGGVRVLLRLLDPKWPCSSKTREVVMRVIENLFFSWSSCVTILMSYGFVDQLMYYIRNGDVSVQELALKVAFRLCGTCEDAKKALGDAGFMADLVKFLNVKSFEVREMAAEALSGMVMVAKNRKRFVQDDESIALLLQLLDPEEGNSGNNKFLISVLMSLTHCNSGRKKIVSSGYAKNIERLASESQVSSAEAKRLVRKLSTNTFRTLLSGIWHHHHS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0202 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 412 IPR000225 GO:0005515
Amo10g0202 627 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 65 623 - -
Amo10g0202 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 369 IPR000225 GO:0005515
Amo10g0202 627 Gene3D - 201 615 IPR011989 -
Amo10g0202 627 SUPERFAMILY ARM repeat 195 594 IPR016024 -
Amo10g0202 627 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 65 623 - -
Amo10g0202 627 SMART arm_5 314 356 IPR000225 GO:0005515
Amo10g0202 627 SMART arm_5 487 527 IPR000225 GO:0005515
Amo10g0202 627 SMART arm_5 357 397 IPR000225 GO:0005515
Amo10g0202 627 SMART arm_5 273 313 IPR000225 GO:0005515
Amo10g0202 627 SMART arm_5 231 272 IPR000225 GO:0005515
Amo10g0202 627 SMART arm_5 399 443 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0202 Amo-Chr10 2064054 2067162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0202 202 421 U-box Gene Family AT2G23140 26.339 4.33e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0202 - - gmx:100783537 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0467 20 5893714 5896866 Amo10g0202 10 2064054 2067162 hybridization
Amo13g4377 13 139693842 139696068 Amo10g0202 10 2064054 2067162 PCT
Amo10g0202 10 2064054 2067162 Amo13g4377 13 139693842 139696068 PCT