Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0198 ATGGGAAGAGCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGGCCATGGACTCCCGAGGAGGATCAAAAACTTATTGATTATATTCAAAAACATGGATATGGAAACTGGAGGACTCTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTACGGTGGACAAACTATCTCCGGCCAGATATCAAGCGTGGTCGGTTCTCATTTGAAGAGGAAGAGACAATCATTCAACTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCTTCTCGGCTACCAGGAAGAACGGATAATGAAATAAAGAATTACTGGAACACTCACATAAGGAAGAGGCTTCTGAGAATGGGAATTGATCCTGTGACACACAGTCCAAGACTTGATCTCTTGGATCTCACTTCCATTCTAAGCTCTTCTCTCTATGGAGATAATAATAATTCTTCACCAATCAACATCCAAAGGCTCCTTACCATGCACCCTATGGTGAACCCGCAGCTTCTCAAGTTAGCTTCCTCTATCATCTCTTCTCAACAACATGATGAAAGCCTTGACTTCACTTCTTATCATAATAATCATTATGATAACCCTCAAATTCAGAACCAGAACCAGATCCAGAACCAAACAGAACAAGAACAACACTTTGTTCAAACTCATCAAGAGTCGGTGACTTGTGTCTCATTGCCACGTTTCATTGAACCAAACAATAATAACAATGTGAACGCATACCCGTTCAATGGAATTGATTTAAGTTCCTTAACAGAAGAAGATTATATCGTCCCTCAATTATCGAGCTATGATTATTATAGTTCTGATAATAATAATCTTCTAGTGGGTCCTTCATCATTGTCAGAAGCTTCAACAACCTTCCATTCAAGCCCCACAACGTTGAATTCGAACATCAATGGTAGCAGCAGCACCGAGGATGAGAGTAGTAGTGACAACATGTTGAGATTTCAAATCCCAGATGTTTTGGATGTCACTCAGTTTTGTGATAATAATGTTGTTTCAGATTATTATTATTATTAG 1035 0.4 MGRAPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLTSILSSSLYGDNNNSSPINIQRLLTMHPMVNPQLLKLASSIISSQQHDESLDFTSYHNNHYDNPQIQNQNQIQNQTEQEQHFVQTHQESVTCVSLPRFIEPNNNNNVNAYPFNGIDLSSLTEEDYIVPQLSSYDYYSSDNNNLLVGPSSLSEASTTFHSSPTTLNSNINGSSSTEDESSSDNMLRFQIPDVLDVTQFCDNNVVSDYYYY* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0198 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo10g0198 344 CDD SANT 69 112 IPR001005 -
Amo10g0198 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo10g0198 344 CDD SANT 16 61 IPR001005 -
Amo10g0198 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo10g0198 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo10g0198 344 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo10g0198 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo10g0198 344 Gene3D - 13 66 - -
Amo10g0198 344 SMART sant 66 114 IPR001005 -
Amo10g0198 344 SMART sant 13 63 IPR001005 -
Amo10g0198 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 328 - -
Amo10g0198 344 MobiDBLite consensus disorder prediction 291 316 - -
Amo10g0198 344 Gene3D - 69 116 - -
Amo10g0198 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo10g0198 344 PANTHER PROTEIN ODORANT1-LIKE 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0198 Amo-Chr10 2047830 2049265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0198 1 332 MYB Transcription Factor Family AT4G21440 55.000 8.50e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo10g0198 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0198 K09422 - gmx:102660551 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4381 13 139773426 139774831 Amo10g0198 10 2047830 2049265 PCT
Amo10g0198 10 2047830 2049265 Amo13g4381 13 139773426 139774831 PCT