Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0195 ATGGGAAAAAAACGGAATAAGGTGGAAGAAGCTCTGCCAGACAACCTGCGGTGCAGCCGCACCGACGGTCGGCAATGGCGGTGCCGGCGGCGCGTGATGGACAACCTCAAACTCTGCGAGCTCCACTACCTTCAAGGGCGCCACCGCCAGTACAAGCAGAAGGTTCCGGAGTCACTGAAGCTTCAGAGAACAACGAGCACCAAGACGGAGGGGCAAAACAGCACCACTTCCCAAAACGACCCCGTTTTGAAGAGCACCGAAATTAGCGCGAGGATTTCAAAGTTGATGATGCTCAGGAGGAAGAAGAGGAAATTATCCGGGGGTTCAGAGGGTGGTCCGATTAAGAAGAAGAGTAAGAAGAAGAAGAAGAAGGAGAAGCGTGATGCGCATTTGGAACTGCTAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAGCAAAGGGAAGAAGAAGGATCAGAGTGAGAATGGGAATGTGGAGGAGGATTTGGAGCTGCACCATTACTATGATGAGGGTGAGCTCAGGAGGGAATTGCCCAATGGTGTTATGGAGATTGCTCCTGCTGCTTCAACCCCACATGATTACACCAATGTGGGTTCCCATTTTGATGTCAAAGTTGGAATCTTTGATCATGGCAGAGCTCTTACACCCCGTTACTTCAGGTCCAAGAATGTTGAGAGAGACCCTGTTGGCAAGTTGCAGGTTGTGCCTTATGGAGTGAACTTGAAGAAGGGTAAGAGGAAGAAGTGCCATTGGTGCCAGAGAAGTGATTCCTGGAATCTGATAAAGTGTTCTCGCTGCCAGAAAGAGTTTTTCTGCATGAATTGCATTAAAGAAAGGTATTTTGACACCCAAAATGAAGTTAAGATGGCTTGTCCAGTGTGTAGAGGAACTTGCACTTGTAAAGATTGCTTGGCTATTCAACGTAAAGACAGAGAAAGTAAGGAATATTTAGCTGGTAGAAGCAGAGTTGATAGAATATTGCATTTTCATTATTCAATCTGTATGCTGCTTCCTGTACTGAAACAAATAAGTGAAGATCAGCATATTGAGCTGGAAACAGAAGCGAAAATGAAAGGGAAAACAATCACTGATATTCTCGTCAAGCAGGTTGAATTCGGCCGCAATGAGAAGAATTACTGCAATCACTGCAAAACACCCATCCTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTATAGCCTTTGCTTAAGTTGTTGTCAGGAATTAAGACAAGGAAGAACTTCTGAAGAAGTTAGCTCTTATTTGTCCAAGCTACCTGATGAAATACACAGTTGTACTGCTGGTGAAAACCAACTTTTGGATGATGAGGCCATTTTACACGAAAACTCAACTGGCTCTTCAACATTGCCTGAATCGTCGGGGTTTGATGGTACCTGTGGTGTGTCATGTCCATCTACAGAGTTAGGTGGTTGTGGCGATAGCCATCTTGATTTGAGATGTCTTTTTCCCTTAAGCTGGATTAAAGAAATGGAAGTAATGGCAGACGAAATAGTTTGCAGTTATGAATTTCCTGAAATTTTGGATAAAAGTTCATCCTGCTTACTGTGTATTGACAGAGATCAGCAGCTGCAAAAGGCAGCTCAAAGAGAAGATTCTAATGATAATTGTTTGTTTTATCCTACGATTTTGGACATTACTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGGAAGGGCCATCCTGTAATAGTGCAAGATGCACTCAAGAGTACTTCAAACCTCAGTTGGGATCCACTCGTCTTGTTCTGTGCTTATCTTGACAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATCAACATTAGGCAGTATTTTACTGGGTCCCTTAAAAGTCAGCCCCAGAGGAATGCTTGGCATGAGATGTTGAAAATAAAAGGCTGGTTGTCTTCCCAGCTATTCAAAGAAGAGTTTCCAGCTCATTTTGCTGCAATAATTGATGCCATACCAATTCAAGAATACATGAATCCCATGTCTGGTTTCCTCAACATGGCTGTAAATTTGCCACAGGGGACTACAAAACATGACATGGGACCATATATCTATATCTCATACGGCTGCGCTGATGAAGAAACTGATTCTGTGACCAAACTATGTTACGACTCATATGATTTGGTTAACATTATGGCACATACCACAGATGTCCCTCTGTCTGCAGAACACCTTACTAAAATACGCAGATTATTGAAAAAGCACAAAGCTCTATGTCGAAGGGAGTCTTCCAAAATTACTGCTGAGCATGCTGAAGACACAGAACAAAATGGACATCAAGGTGTGGTAAGAGAAGGGATGGACTTTTTCAGGAGAGTCAATAGAATATCTTCTATCCCCACTGAAGCCAGAACGAAAACTAACCACAGTTTAGACACCGATATCTCTGGGAGTGGAGAATGTGATTTAGTTTCTGATGCTGGAAAAGCGGAAAGTTCTTCACCTATCCACAAGACAGTTAAAAGCACTGAAATGTCTCCAGACCATGATAATACTAGAAGAACCTTTGAAAATCCGAACGGTGATAAAAGCAAGTTTACTGAGGATTCGGGTGCTCAGTGGGATGTCTTTCGGAGAGAAGATGTACCAAAGCTCTTGGAATACCTCAAAAGGCATCATGATGAATTTTCTTATAGCCATGAATACCAAGAGGAGATGGTTCATCCAATTCTTGATCAGAGCTTCTATCTCAACAATTTTCACAAAATGAGACTTAAGGAGGAATTTGAAATTGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTTATCATTCCTACTGGATGTCCATACCAAATTCGGAATCCCAAGTGTTCTGTTCATGTGGTATTGGAGTTTGTTTCCCCTGAGAATGTTTCTGAAAGCATCCAATTGATCGATGAGGTTCGTCTGCTTCCAAAAGACCATATAGCAAAAGTAGACAAACTTGAGGTGAAGAAGATGGCTCTCTATAGCATGAATACAGCAATTAAAGAAATACGTGACTTTACAAGCAAAGCTTGA 3054 0.425 MGKKRNKVEEALPDNLRCSRTDGRQWRCRRRVMDNLKLCELHYLQGRHRQYKQKVPESLKLQRTTSTKTEGQNSTTSQNDPVLKSTEISARISKLMMLRRKKRKLSGGSEGGPIKKKSKKKKKKEKRDAHLELLRMVLQREVEKSKGKKKDQSENGNVEEDLELHHYYDEGELRRELPNGVMEIAPAASTPHDYTNVGSHFDVKVGIFDHGRALTPRYFRSKNVERDPVGKLQVVPYGVNLKKGKRKKCHWCQRSDSWNLIKCSRCQKEFFCMNCIKERYFDTQNEVKMACPVCRGTCTCKDCLAIQRKDRESKEYLAGRSRVDRILHFHYSICMLLPVLKQISEDQHIELETEAKMKGKTITDILVKQVEFGRNEKNYCNHCKTPILDLHRSCLSCSYSLCLSCCQELRQGRTSEEVSSYLSKLPDEIHSCTAGENQLLDDEAILHENSTGSSTLPESSGFDGTCGVSCPSTELGGCGDSHLDLRCLFPLSWIKEMEVMADEIVCSYEFPEILDKSSSCLLCIDRDQQLQKAAQREDSNDNCLFYPTILDITSDHFEHFQKHWGKGHPVIVQDALKSTSNLSWDPLVLFCAYLDRSITRYENNKDLLEACLDWCEVEINIRQYFTGSLKSQPQRNAWHEMLKIKGWLSSQLFKEEFPAHFAAIIDAIPIQEYMNPMSGFLNMAVNLPQGTTKHDMGPYIYISYGCADEETDSVTKLCYDSYDLVNIMAHTTDVPLSAEHLTKIRRLLKKHKALCRRESSKITAEHAEDTEQNGHQGVVREGMDFFRRVNRISSIPTEARTKTNHSLDTDISGSGECDLVSDAGKAESSSPIHKTVKSTEMSPDHDNTRRTFENPNGDKSKFTEDSGAQWDVFRREDVPKLLEYLKRHHDEFSYSHEYQEEMVHPILDQSFYLNNFHKMRLKEEFEIEPWTFEQHVGEAVIIPTGCPYQIRNPKCSVHVVLEFVSPENVSESIQLIDEVRLLPKDHIAKVDKLEVKKMALYSMNTAIKEIRDFTSKA* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0195 1017 MobiDBLite consensus disorder prediction 57 86 - -
Amo10g0195 1017 ProSiteProfiles WRC domain profile. 12 58 IPR014977 -
Amo10g0195 1017 SUPERFAMILY Clavaminate synthase-like 556 1000 - -
Amo10g0195 1017 ProSiteProfiles Zinc finger RING-type profile. 249 295 IPR001841 -
Amo10g0195 1017 MobiDBLite consensus disorder prediction 50 164 - -
Amo10g0195 1017 Pfam WRC 13 54 IPR014977 -
Amo10g0195 1017 SMART cupin_9 657 980 IPR003347 -
Amo10g0195 1017 Gene3D Cupin 548 989 - -
Amo10g0195 1017 PANTHER PROTEIN B160 9 1015 - -
Amo10g0195 1017 MobiDBLite consensus disorder prediction 838 864 - -
Amo10g0195 1017 ProSiteProfiles JmjC domain profile. 676 980 IPR003347 -
Amo10g0195 1017 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1015 IPR045109 GO:0032454|GO:0033169
Amo10g0195 1017 Pfam JmjC domain, hydroxylase 867 959 IPR003347 -
Amo10g0195 1017 MobiDBLite consensus disorder prediction 821 864 - -
Amo10g0195 1017 MobiDBLite consensus disorder prediction 127 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0195 Amo-Chr10 2023073 2029123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0195 17 93 GRF Transcription Factor Family AT5G53660 34.524 1.89e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo10g0195 JmjC 7.4e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0195 K15601 - gmx:100810673 1325.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4383 13 139794970 139799931 Amo10g0195 10 2023073 2029123 PCT
Amo10g0195 10 2023073 2029123 Amo13g4383 13 139794970 139799931 PCT