Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0172 ATGGATAACATTGTAGTAGAGAGTACTACTACTTTGGGTTATATATATATAATAATGCTTTTCCTATCATTGAAACATGAAATAGTAGCAGCAGGAGATAACAACAGTGCCATTGATGACCTTGTGACTAACTTGCCTGGCCAGCCTCTTGTAGATTTCAAGCACTATGCTGGTTATGTCACKGTTARTGATGACACCAATAATGGAGAAAGAGCACTCTTCTATTGGTTTTTTGAAGCCATCACCAACCCTCAAGATAAACCATTGGTGCTGTGGCTCAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACAGATGGCAAGGGCCTTAAATTTAATAACTACTCTTGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTAGGCTTTTCCTACTCAAATTCAACTATAGACTATGAAAATCTGGATGATGATATCACAGCTAATGATGCTTACAATTTTCTGCACAATTGGTTTCTCAAGTTTCCATCATATAGAACAAGCACATTTTATATAGCAGGAGAGAGCTATGCTGGGAAGTATGTACCTGAGCTAGCAGAACTGATATATGATAGGAAAGATGACCCTTCCCTTCATATTAATCTCAAGGGTATTTTGTTGGGGAATCCTGAAACATCTGATCCTGAAGACTTGTTAGGGCAAGTTGATTACGCTTGGAGCCATGCAGTGATATCTGATGAAACCTACAAAACAATAAGAAGAAGTTGTAACTTCAGTGATCCATATAAAAACAAAGATTGTGGTGATGGACTTGATGAACTTTATAAGCAATACGACCAAATTGATATTTATAGCCTCTACACCTCTGTTTGTTTTGCCACCACAGCGCTTTCAAATCATCAAAATTTACAAACACAAATCAACCACTCATCTAGGAACAAGATGCGTAGAATGATGGGAGGTTTTGATCCATGCTTGGATAATTATGCCAGAGCCTTTTATAATAGAGCAGATGTTCAGAAAGCTCTCCATGCCAGTGATGGTCTCATTCTCAAGAATTGGACTATTTGCAACGACGATATATTCAATAGTTGGAATTGGAACAAATCAAAGGCCTCTGTTATCCCAATATACAGGAAGCTTATTTCAGGAGGACTTAGGATTTGGGTTTATAGTATTCTGGGTTTGGGAATCACTAAGCAATGGAGGCCATGGTACCATGAGAAACAGGTTAGTGGGTGGTATCAAGAATACGAGGGTCTCACTTTTGCAACATTTCGAGGAGCTGGCCATGCTGTCCCTTCTTTCAAACCAAGCAATTCACTTGCATTCTTCTCTTCCTTCCTTCTTGGACAATCTCCACCCTCTACTAGATCTACATGA 1392 0.3951 MDNIVVESTTTLGYIYIIMLFLSLKHEIVAAGDNNSAIDDLVTNLPGQPLVDFKHYAGYVTVXDDTNNGERALFYWFFEAITNPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNYSWNKEANMLFLESPVGVGFSYSNSTIDYENLDDDITANDAYNFLHNWFLKFPSYRTSTFYIAGESYAGKYVPELAELIYDRKDDPSLHINLKGILLGNPETSDPEDLLGQVDYAWSHAVISDETYKTIRRSCNFSDPYKNKDCGDGLDELYKQYDQIDIYSLYTSVCFATTALSNHQNLQTQINHSSRNKMRRMMGGFDPCLDNYARAFYNRADVQKALHASDGLILKNWTICNDDIFNSWNWNKSKASVIPIYRKLISGGLRIWVYSILGLGITKQWRPWYHEKQVSGWYQEYEGLTFATFRGAGHAVPSFKPSNSLAFFSSFLLGQSPPSTRST* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0172 463 Gene3D alpha/beta hydrolase 37 296 IPR029058 -
Amo10g0172 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 457 IPR001563 GO:0004185|GO:0006508
Amo10g0172 463 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Amo10g0172 463 Pfam Serine carboxypeptidase 47 452 IPR001563 GO:0004185|GO:0006508
Amo10g0172 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Amo10g0172 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Amo10g0172 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Amo10g0172 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Amo10g0172 463 PANTHER CARBOXYPEPTIDASE 33 457 - -
Amo10g0172 463 Gene3D - 391 454 - -
Amo10g0172 463 SUPERFAMILY alpha/beta-Hydrolases 39 456 IPR029058 -
Amo10g0172 463 Gene3D - 328 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0172 Amo-Chr10 1835485 1839443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0172 311 455 Calmodulin-binding Proteins AT2G22960 28.235 8.81e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0172 K16297 - gmx:100819700 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4066 13 133600413 133603004 Amo10g0172 10 1835485 1839443 PCT
Amo10g0172 10 1835485 1839443 Amo13g4066 13 133600413 133603004 PCT