Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0164 GAACTACCTCAGGTTCTCCGCAAAGTTTCTACCTTTGTCTTGGTCAGTGGTGTTAGTTCAACTTGGTGTGTGTCTTTGGAGTTCATTGTTGCAGTGGAGGCCTCGGTTTTGGAAACTTTACCCTTTGAGGAAATGGGATGTACGAATTTGGTGTTGCATGTTCGACTCTTTGTTACTCTGATGGTGATTCTTGCTGGAACTTTCTGTGCAGTTGGTGACACTGACGTAGTTGATGTTGCAGCAATCAGTAGTCTATATGTTGCTCTTGGCTCACCGCCTCTTCTAGGGTGGAAGCCTGTGGGAGGAGATCCATGTTTTGAAATGTGGCAAGGTGTTGGCTGTGTATTTTCCAACATCACTTCCATAAGACTTGATGGCCTGAATTTGGGTGGAGAGCTTGGTAGTAATTTGAATTTTCCATCCATCTTAGAAATTGATCTTAGCAACAACCACATTGGAGGGCCCATTCCATTCACTTTGCCCCCTACTCTTACAAGCTTGTCTCTCTCAGGAAACCAGTTAAATGGAAGCATTCCAGATGCTTTATCATTACTAACTCAATTGTCACACTTGGATTTGTCAAATAACAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGACTTTATCATCCCTTACTACATTATACTTGCAGAACAATCAACTCTCTGGGACCCTTTATGTTTTGCAGGACCTGCCTCTTCAGGATCTGAATATTGAGAATAACTCATTCTCCGGGCCAATTCCGCCAAAACTGCTGAGTGTCCCTATTTTCAGAAAAGATGGAAATCCATTTAATACTAGTGTTATTCCATCACCTGCCGCAGCCCCATCACCTGCAGCTATGGCTCCATCCCCTGGGAAATCACCGTGGAGATTAGCAAATAGTCCTTTTTCCCCAACTGCATCAGTGCTTGCAAGTGCTAGGAAGTCATTTATAGCTAAGAATATCATTTGGATTGCTGGTGCTGGTCTTTTGATATTTATTTTGTTAGGCGTTTGTATTTTTATGCTGTGGTGCTTTAAACGAAGGCCAGAGAAGAAAAATGCCAAGAAGCAAAATGTTGGTGTCTTCGAAAGTCCTTTACATAAACCTACTTGCAGTGACACTTCCTTTGAAACAACCAATCAGGAGGAGAAAGCAGTTGAGAAACCATCACTTGTATCTGAAGTGCCAAATAGAAAAACAAATTTGATTCCAAAGGTTCAGGATGAACAAGGAAAATATGTGAAAACAGCATCTGCAACTTCACAATACAATCATGGTTCTGAGTTAATCAACACTAGTGAGGCTTCCAAACTTTCACACCTCCAGCCACCACCGCGTCCTTACCCAACGACACAAAGTCAGAAGTTGATCCTCAATCCAGCTATACCTGTCAAAGGGTCTGAAATAAATGACAAAACATGTTCCCTTGAAGTTTATTCTATTGCATCACTTCAACAATATACCAATAGCTTTTCCCAAGAAAATTTTATTGGGGAAGGCACCTTAGGGCCTGTTTATAGGGCTGAGTTCCCTGATGGAAAGATATTGGCTGTGAGGAAATTAGATGCCACTGCTTCTATGGAGCAGAACCATGAACAATTTCTCCAATTAGTGTCCAACATCTCAAAAATTCAGCACCCTAATATTGTGAAGTTTACGGGCTACTGTACCGAGTATAGCCAACGGCTGCTTGTGTATGAGTATTGCAGTAATGGAACCCTGCATGATGCACTGCATGGCGATAGTGAATGCCGTATTAGACTAACATGGAATGCTCGAATTCAGGTGGCTCTTGGAGCTGCAAGAGCTTTAGAGTATATGCATGAGAACTTTCGGCCACCTATTGTGCACCGAAATTTTAAGTCTGCCAATGTACTCCTAAATGACAACCTGGAAGTGTGCATCTCTGATTGTGGATTAGGTCCTTTGCTATCTTCTGGCTCTGCTGGTCAGTTATCAGGACGACTCCTCACGGCTTATGGCTACAGTGCTCCAGAATTTGAGTTCGGAAGCTATACACATCAAAGTGATGTATTCAGTTTTGGAGTGGTAATGTTGGAACTTCTCACGGGACGAAAATCCCACGACAGGTCACTTCCGCGAGGGGAGCAAATATTGGTGAGATGGGCAGTCCCTCAACTCCATGACATCGACGCATTGTCGAAAATGGTTGACCCCAGCTTAAATGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGCGTCCAGCATGAACCTGAATTCAGGCCAGCAATGTCTGAAGTTGTTCAAGATCTTCTAAGGATGATGTAA 2298 0.4312 ELPQVLRKVSTFVLVSGVSSTWCVSLEFIVAVEASVLETLPFEEMGCTNLVLHVRLFVTLMVILAGTFCAVGDTDVVDVAAISSLYVALGSPPLLGWKPVGGDPCFEMWQGVGCVFSNITSIRLDGLNLGGELGSNLNFPSILEIDLSNNHIGGPIPFTLPPTLTSLSLSGNQLNGSIPDALSLLTQLSHLDLSNNNLSGQLPSSTGTLSSLTTLYLQNNQLSGTLYVLQDLPLQDLNIENNSFSGPIPPKLLSVPIFRKDGNPFNTSVIPSPAAAPSPAAMAPSPGKSPWRLANSPFSPTASVLASARKSFIAKNIIWIAGAGLLIFILLGVCIFMLWCFKRRPEKKNAKKQNVGVFESPLHKPTCSDTSFETTNQEEKAVEKPSLVSEVPNRKTNLIPKVQDEQGKYVKTASATSQYNHGSELINTSEASKLSHLQPPPRPYPTTQSQKLILNPAIPVKGSEINDKTCSLEVYSIASLQQYTNSFSQENFIGEGTLGPVYRAEFPDGKILAVRKLDATASMEQNHEQFLQLVSNISKIQHPNIVKFTGYCTEYSQRLLVYEYCSNGTLHDALHGDSECRIRLTWNARIQVALGAARALEYMHENFRPPIVHRNFKSANVLLNDNLEVCISDCGLGPLLSSGSAGQLSGRLLTAYGYSAPEFEFGSYTHQSDVFSFGVVMLELLTGRKSHDRSLPRGEQILVRWAVPQLHDIDALSKMVDPSLNGAYPMKSLSRFADIVSSCVQHEPEFRPAMSEVVQDLLRMM* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0164 765 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 54 191 - -
Amo10g0164 765 PANTHER LEUCINE RICH REPEAT KINASE 2 54 191 - -
Amo10g0164 765 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 185 765 - -
Amo10g0164 765 Gene3D Phosphorylase Kinase; domain 1 459 564 - -
Amo10g0164 765 SUPERFAMILY Protein kinase-like (PK-like) 470 761 IPR011009 -
Amo10g0164 765 PANTHER LEUCINE RICH REPEAT KINASE 2 185 765 - -
Amo10g0164 765 Gene3D Transferase(Phosphotransferase) domain 1 565 765 - -
Amo10g0164 765 Gene3D Ribonuclease Inhibitor 80 275 IPR032675 -
Amo10g0164 765 MobiDBLite consensus disorder prediction 368 387 - -
Amo10g0164 765 PRINTS Leucine-rich repeat signature 164 177 - -
Amo10g0164 765 PRINTS Leucine-rich repeat signature 185 198 - -
Amo10g0164 765 Pfam Protein tyrosine and serine/threonine kinase 490 761 IPR001245 GO:0004672|GO:0006468
Amo10g0164 765 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Amo10g0164 765 ProSiteProfiles Protein kinase domain profile. 487 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0164 765 SUPERFAMILY L domain-like 109 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0164 Amo-Chr10 1743702 1748750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0164 74 765 Strubbelig Receptor Gene Family AT4G03390 50.267 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Amo10g0164 PK_Tyr_Ser-Thr 8.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0164 - - ahf:112783685 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0504 20 6298738 6303924 Amo10g0164 10 1743702 1748750 hybridization