Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0155 ATGAATGACCTGTTTTCAGGTTCCTTCAGAAAATATAGCAGTGACCTGAAGGAGGAAAGGCAGCTTGATGATGTGGAGGCTGGAAGGGAAAGCCTAAATCTGGAGAAATTCTTTGAAGAAGTGGAGGGTGTAAAAGATGAGATGAAAGTGGTTGAGAGCCTCTGCAGAAAATTGCAAGAAGCCAATGAAGAAAGCAAAACCATTCATGATGCCAAAACCGTTAAGGATCTTCGAGCTCGGATGGACAAAGATGTTGTGCAGGTCCTCAAGCATGTTAAGATCATCAAAACCAAGCTTGAATCTCTACAGCGTTCCAACGCAGCGAATCRAAACGTTCCTGGCTGTGGTCCTGGTTCTTCTGCAGACAGAACCAGGACTTCAGTGGTTAGTGGATTAGGGAAGAAGCTAAAGGACATRATGGACGATTTTCAAGGYTTGAGAGCAARGATGCAACATGAGTACAAGGAAACCATTGARCGCAGGTACTTCACAATCACAGGGGAGAAGGCAGATGAAGAGACCATAGAGAATTTGATATCAAGTGGAGAGAGTGAAAATTTGGTACAGAAAGCGATTCGAGAACAAGGTAGGGGTCAGATAATGGACACCATATCAGAAATTCAAGAAAGGCATGATGCTGTAAAGGAAATTGAGAAGAATTTGATAGAGTTGCATCAGGTGTTCTTGGACATGGCAGCWTTGGTAGAGTCTCAGGGGGAACAGCTTAATAACATAGAGAGTCATGTAGCSCATGCAAGCTCATTCGTTACTCGCGGTGTTTCTCAGCTTCARGAAGCTAGAGATTATCAAACCAACTCTAGGAAGTGGTATTGCTATGCCATCATTCTTGCTATTCTCCTCATCCTTTTACTCTTGGCTCCTCTCTTGTTAAATCTTTTACCACATTTCAGAAGAAGGTGA 921 0.4267 MNDLFSGSFRKYSSDLKEERQLDDVEAGRESLNLEKFFEEVEGVKDEMKVVESLCRKLQEANEESKTIHDAKTVKDLRARMDKDVVQVLKHVKIIKTKLESLQRSNAANXNVPGCGPGSSADRTRTSVVSGLGKKLKDXMDDFQGLRAXMQHEYKETIERRYFTITGEKADEETIENLISSGESENLVQKAIREQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGEQLNNIESHVAHASSFVTRGVSQLQEARDYQTNSRKWYCYAIILAILLILLLLAPLLLNLLPHFRRR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0155 306 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo10g0155 306 CDD SynN 34 191 IPR006011 GO:0016020
Amo10g0155 306 Pfam SNARE domain 240 292 IPR000727 -
Amo10g0155 306 SMART tSNARE_6 199 266 IPR000727 -
Amo10g0155 306 Coils Coil 41 64 - -
Amo10g0155 306 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Amo10g0155 306 CDD SNARE_syntaxin1-like 203 265 - -
Amo10g0155 306 Gene3D - 197 296 - -
Amo10g0155 306 PANTHER SYNTAXIN-124-RELATED 11 295 - -
Amo10g0155 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Amo10g0155 306 Gene3D - 34 161 - -
Amo10g0155 306 SMART SynN_4 29 155 IPR006011 GO:0016020
Amo10g0155 306 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Amo10g0155 306 PANTHER SYNTAXIN 11 295 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0155 Amo-Chr10 1678671 1679591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0155 1 303 SNARE and Associated Proteins AT1G61290 73.267 4.11e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0155 K08486 - gmx:100818999 459.144