Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0119 ATGGATTCATGTCAACCCCAACTCCCACCGGGATTCAGGTTCCACCCAACCGACGAAGAACTCATCGTTCACTACCTCAAGAGAAAAGCTTCCTCTGCTCCTCTCCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCATGGGAGCTTCCAAGTAAGGCCACGTTTGGGGAGCAAGAATGGTATTTCTTTAGTCCGAGGGATCGCAAGTATCCGAATGGGGCTCGCCCAAACAGAGCAGCTACGTCCGGATATTGGAAGGCCACCGGCACTGATAAGCCTATTATTGCGTCTGATGGCCAACACCGACTCGGCGTCAAGAAAGCTCTCGTCTTCTATGGTGGCAAGCCTCCTAAAGGGGTTAAAACCAATTGGATCATGCACGAATATAGACTCACTACTACTCATAACAACAATTCTATCTCATCAAAGTCTTTTCCTTCTCTTCCTTCCAATCTTCCTTCCTCCAATCAGAAGAAGAATTCCTTGAGGCTTGATGATTGGGTGTTGTGCCGAATATATGAAAAAAGCAACCGTGGCAATTTTGCAAGAACAGCGTTGATGGAGCACCATGATCATGATGATGATGATGACAACAAGGATCAGCTTTCCGCGGAAACAACGAGTATGATAGAAAACATGTCCACTATGAGTCAGAATTCCAAGCCCACACAACATTATGGACCATTGCTGGTTCAAAACGATGACAACTTCTTCGATGGAATCTTAGCCGCTGATCATCAAAATCATCAACATCACAACTTGCCAATGAAGAGGGCACTGGTGAATATGAATAATTCGCAGTTTTGGAATGAGACAAACAAGAGGTTCCATTGTGATCTCAATAACAACACTAACACTGTTGCTAATATTGCTAATAATGATGAGGATAACACTTCCTTTGTTTCACTGCTTAGCCATAATCAGATTCCTCATCCTACTAACAATGCTTCTCTTCTTGGCCCTACTGTTGCTGATGGTGTTTTCAGGCAACACTTTCAACTTCAAACAATTAATTGGAACTTATAA 1038 0.4412 MDSCQPQLPPGFRFHPTDEELIVHYLKRKASSAPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIIASDGQHRLGVKKALVFYGGKPPKGVKTNWIMHEYRLTTTHNNNSISSKSFPSLPSNLPSSNQKKNSLRLDDWVLCRIYEKSNRGNFARTALMEHHDHDDDDDNKDQLSAETTSMIENMSTMSQNSKPTQHYGPLLVQNDDNFFDGILAADHQNHQHHNLPMKRALVNMNNSQFWNETNKRFHCDLNNNTNTVANIANNDEDNTSFVSLLSHNQIPHPTNNASLLGPTVADGVFRQHFQLQTINWNL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0119 345 MobiDBLite consensus disorder prediction 140 162 - -
Amo10g0119 345 Gene3D NAC domain 17 184 IPR036093 GO:0003677|GO:0006355
Amo10g0119 345 ProSiteProfiles NAC domain profile. 8 179 IPR003441 GO:0003677|GO:0006355
Amo10g0119 345 PANTHER NAC TRANSCRIPTION FACTOR 56 5 318 - -
Amo10g0119 345 SUPERFAMILY NAC domain 5 179 IPR036093 GO:0003677|GO:0006355
Amo10g0119 345 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Amo10g0119 345 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 5 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0119 Amo-Chr10 1427642 1429283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0119 5 344 NAC Transcription Factor Family AT1G61110 50.432 3.84e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo10g0119 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0119 - - aip:107624204 625.55