Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0084 ATGAGAATCTTCTTCACTCACCTTAACTACCTCATCATCCTTGTTATTAGCTGCTTCTTCTTCTTTATCACTCCATCAACCTCTTTGGATACTTTAACCGGAACTCAAATCCTCACAACCAACCAAACCTTGTTGTCGAAAAACCAAACCTTCGCTCTAGGCTTCTTCAGAGGTTCCAACACCAACTATTACCTCGGAATATGGTACAACAACATCAATCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAACCCCGTTGACAACTCTACCGGCTATCTCAAGATCGGAGACAACGGAAACTTTGTCCTCCTCAATTCATCCGGGAACCCTGCATGGTCCTCCAACCAAACCAGCGCCAAGAATCCTGTTCTCCAGCTCCTCGATACCGGTAACCTTGTTCTCAAAGATTCATCAGACAAGACCAACAATAACTACTTATGGCAGAGCTTTGATTACCCAACGGATACCGTGTTACCGGGGATGAAGATCGGTTGGAACTTGGACACAGGAACGGAGAAGCATTTAACATCATGGAAGGTTACAGGTGAAGACCCTTCAAGCGGTGACTTCACTATTAAGTTAGATTACCATGGTTTACCTGAGGCTTTCCTCAGGAAAAACCAAACTATAATATTCCGAACTGGTCCTTGGAATGGTGAGGGATACAGTGGGATCCCGGCGATGAAARACAACATCGACGGTCTCAAGTTYAATTTCACTTATGATGAGCACAGTGTGTKGTACTCTTTTTCCATTACAGAACCTTCCTTGTTGCCGAGGATAATTSTGACATCTGATACTGATGGCGAGTTTCAACGCTACATGTGGATACAAGGAAGTTGGAACAAGTTCTGGTATCAACCAGCGGATCAATGCGATTACTATAGACAGTGTGGTCCGTAYGGAGTGTGTGACGAGAATGCTTCAYCGATTTGCAAGTGTATGCAGGGGTTCAGGCCTAAGAACCAAGAAGCTTGGAACTTGAGAGATGGATCTGATGGGTGTGTGAGGAACACGGYTTTGAATTGTTCCACTGACAAGTTCTTGCATCTTGAGCACACRAAGCTGCCGGAGACAAGCAGTGTGTTTGTGAATAAGAGTATGACACTTGATGAATGTGGGAGTTTGTGTAAGAGGAATTGTTCATGCACTGCATATGCAAACATCGATATCAGAAATGGAGGAAGTGGCTGTGTTATGTGGCTTGGTCAACTCATTGACATGAGAGTCTACAGTACGGATGGCCAAGATCTCTATGTCAGATTAGCAGCTGCTGATATAGGATCTACTAGCTCCAACAAGAATCATAGAGCAGTTCTGGCTATTGGCATCACACTTATTGCACTTGTTTTAGTTTTGGGATTGCTTGCTATTTGTTACTTAAGGAGGAAGAGAAAACAAAGGTCTATAGGTATTGTCCACAGAAATCATGATTGGTTAATGAATGAGGTGGTGCCTTCTAGAAGATACTTGGGTGATGAAAGGAACATGGATGATCTAGAGTTGCCAATGTTTGATTTTGATACCTTAATGATGGCTACAAACAATTTCTCTCAAGATAATAAACTTGGAGAAGGAGGCTTTGGTAGTGTTTATAGGGGCAGATTGATTAAAGGTCAAGAAATTGCTGTGAAGAGGTTATCAGAAGATTCTGGACAAGGAATTGAAGAGTTTAAGAATGAAGTCAAGTTAATTGTCAAGCTCCAACACCGAAATCTTGTGCGGTTGCTTGGTTGCTGCATTGAGAAGGATGAAAAAATMTTGGTGTATGAGTATATGAAAAATAGAAGCCTTGATTCCATTTTGTTTGACAAATCAAAAAGAACCTTACTTGACTGGGARAGGCGTTACARTATTATATATGGGATRGCAAGAGGACTTCTTTATTTGCATCAAGATTCAAGATTTCGAATTATTCATAGAGATCTCAAGACAAGTAAYATATTATTAGATAATGAAATGAATCCAAAGATATCAGACTTTGGAATGGCTAGAATTTTCGGCAAAGATCAAATGCAAGCAAAAACATTAAGAATTGTTGGAACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCAATAAAATCCGATGTTTTTAGCTTTGGAGTTATGGTATTGGAGATCGTAACTGGGAAGAAGAATAGAGAGTTTTATAGTGAGAATGATGAATTGAATCTTCTGGGAAATGTATGGAAGCATTGGCATGAAGGAACAGCATTGTCACTTCTTGATTCATCTATTGACAATTTATACACAGAAGCTGAAGTTGTAAAATGCATACATATTGGTCTCTTATGCGTCCAAGAACATGCAGAAGATAGGCCAACAATGTCTTCAGTGGTCTTAATGTTGAGTAGTGAAGCTCCATCAATGCCAAATCCTAAAATTCCGGGATTTTCAACATGGAAAAAACATCCAGAGATTGATTCATCGTCAAATAAACAAGATGAAACATGGAGTGTGAATCAAGTCACAATCACAATGTTAGATGCTAGCCAACATACATACACAAGAAACTTTAAGAAGCCGCCTAGATCTACTAGCTCCAACAAGAATCATAGAGTAGTACAGGCTGTTGGCATCACACTTAGCGCACTTGTTTTAGTTTTGGGATTGGTTGCTATTTGTTACCTAATGAAGAAGAGTAAACAAAGATCTAGAGCCGCTATTCCAGGTTTTGTCCGCAGAAGTCATGATTGGATAATGAATGAGGTGGTGTTTTCTAGAAAACACTTACGTGATGAAAGGAACATGGATGATCTGGAATTGCCAATGTTTGATTTCGATACCTTAACAATGGCTACAAACAATTTCTCTCAAGATAATAAACTTGGAGAAGGAGGCTTCGGTAGAGTTTATAGAATTATAACTGGAAAAAAGAATAGAGAGTTTTACAGTGATAACAATGAATTAAATCTTCTAGGAAATGTATGGAGGCATTGGCATGAAGGAACTGCACTGACACTAATTGATCCATCCATTGGCAATTCATACGCAGAATCTAAAGTTATGAGATGCATACATATTAGTCTCTTATGTGTACAAGAACGTGCAGAAGATAGACCAACAATGTCTTCAGTGATCTTAATGTTGAGTAGTGAAGCTCCATCAATGCCAAAACCTAAAATTCCTGGATTTTCCGCAAGGACAAATTATCCAGAGATTGATTCATCTTCAAACAAGCAAAATGATATCTGGAGTGTGAATCAAGTCACAATCACAATGTTAGATGCT 3249 0.393 MRIFFTHLNYLIILVISCFFFFITPSTSLDTLTGTQILTTNQTLLSKNQTFALGFFRGSNTNYYLGIWYNNINPQTIVWVANRDNPVDNSTGYLKIGDNGNFVLLNSSGNPAWSSNQTSAKNPVLQLLDTGNLVLKDSSDKTNNNYLWQSFDYPTDTVLPGMKIGWNLDTGTEKHLTSWKVTGEDPSSGDFTIKLDYHGLPEAFLRKNQTIIFRTGPWNGEGYSGIPAMKXNIDGLKFNFTYDEHSVXYSFSITEPSLLPRIIXTSDTDGEFQRYMWIQGSWNKFWYQPADQCDYYRQCGPYGVCDENASXICKCMQGFRPKNQEAWNLRDGSDGCVRNTXLNCSTDKFLHLEHTKLPETSSVFVNKSMTLDECGSLCKRNCSCTAYANIDIRNGGSGCVMWLGQLIDMRVYSTDGQDLYVRLAAADIGSTSSNKNHRAVLAIGITLIALVLVLGLLAICYLRRKRKQRSIGIVHRNHDWLMNEVVPSRRYLGDERNMDDLELPMFDFDTLMMATNNFSQDNKLGEGGFGSVYRGRLIKGQEIAVKRLSEDSGQGIEEFKNEVKLIVKLQHRNLVRLLGCCIEKDEKILVYEYMKNRSLDSILFDKSKRTLLDWERRYXIIYGXARGLLYLHQDSRFRIIHRDLKTSNILLDNEMNPKISDFGMARIFGKDQMQAKTLRIVGTYGYMSPEYAMDGNFSIKSDVFSFGVMVLEIVTGKKNREFYSENDELNLLGNVWKHWHEGTALSLLDSSIDNLYTEAEVVKCIHIGLLCVQEHAEDRPTMSSVVLMLSSEAPSMPNPKIPGFSTWKKHPEIDSSSNKQDETWSVNQVTITMLDASQHTYTRNFKKPPRSTSSNKNHRVVQAVGITLSALVLVLGLVAICYLMKKSKQRSRAAIPGFVRRSHDWIMNEVVFSRKHLRDERNMDDLELPMFDFDTLTMATNNFSQDNKLGEGGFGRVYRIITGKKNREFYSDNNELNLLGNVWRHWHEGTALTLIDPSIGNSYAESKVMRCIHISLLCVQERAEDRPTMSSVILMLSSEAPSMPKPKIPGFSARTNYPEIDSSSNKQNDIWSVNQVTITMLDA 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0084 1083 Pfam PAN-like domain 344 409 IPR003609 -
Amo10g0084 1083 Gene3D Transferase(Phosphotransferase) domain 1 956 1049 - -
Amo10g0084 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Amo10g0084 1083 PANTHER - 958 1082 - -
Amo10g0084 1083 PANTHER - 17 836 - -
Amo10g0084 1083 PANTHER - 893 959 - -
Amo10g0084 1083 Gene3D Transferase(Phosphotransferase) domain 1 594 797 - -
Amo10g0084 1083 Gene3D Hepatocyte Growth Factor 341 424 - -
Amo10g0084 1083 Gene3D Phosphorylase Kinase; domain 1 493 593 - -
Amo10g0084 1083 CDD B_lectin 35 154 IPR001480 -
Amo10g0084 1083 SMART ntp_6 344 423 IPR003609 -
Amo10g0084 1083 ProSiteProfiles Protein kinase domain profile. 518 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0084 1083 Gene3D - 25 151 IPR036426 -
Amo10g0084 1083 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 219 IPR036426 -
Amo10g0084 1083 Pfam D-mannose binding lectin 76 180 IPR001480 -
Amo10g0084 1083 Pfam Receptor serine/threonine kinase 900 933 IPR022126 GO:0004674
Amo10g0084 1083 Pfam Receptor serine/threonine kinase 473 508 IPR022126 GO:0004674
Amo10g0084 1083 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Amo10g0084 1083 SMART serkin_6 518 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0084 1083 CDD PAN_AP_plant 340 424 - -
Amo10g0084 1083 SMART blect_4 35 154 IPR001480 -
Amo10g0084 1083 CDD STKc_IRAK 524 789 - -
Amo10g0084 1083 SUPERFAMILY Protein kinase-like (PK-like) 503 816 IPR011009 -
Amo10g0084 1083 Pfam Domain of unknown function (DUF3403) 791 836 IPR021820 GO:0004674
Amo10g0084 1083 Pfam Domain of unknown function (DUF3403) 1038 1083 IPR021820 GO:0004674
Amo10g0084 1083 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Amo10g0084 1083 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Amo10g0084 1083 SUPERFAMILY Protein kinase-like (PK-like) 928 967 IPR011009 -
Amo10g0084 1083 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 958 1082 - -
Amo10g0084 1083 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 836 - -
Amo10g0084 1083 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 893 959 - -
Amo10g0084 1083 ProSiteProfiles PAN/Apple domain profile. 344 424 IPR003609 -
Amo10g0084 1083 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Amo10g0084 1083 Pfam Protein tyrosine and serine/threonine kinase 520 787 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0084 Amo-Chr10 975893 988555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0084 848 964 Receptor kinase-like Gene Family AT4G05200 31.452 4.17e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo10g0084 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0084 - - aip:107621495 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0787 20 11364207 11367949 Amo10g0084 10 975893 988555 hybridization
Amo13g4407 13 140038462 140041902 Amo10g0084 10 975893 988555 PCT