Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0078 ATGAGTGCTTCTACAAATCTTATTGTCTATTTCTTCTGTGCCTTCATCTTCTCATTCAGTTCCTTTTTCAATATTGTAATCTCTGTGGATACCTTAAGTGCAAGACAGTCACTTGGGATCAACCAAACACTTGTATCCTCAAAGCAAGTGTTTGAGTTCGGCTTCTTCAATGGAACCAACATCTCCACATGGTACTTAGGAATATGGTACAAGGACATTCCTCAAAGAACAGTGGTTTGGGTTGCAAACCGAGACACCCCACTTAAGGATACCAATGGAACTCTCAAGATTGGAGCAAGGGGGAACCTTGTTCTTCTTGATCATGCAGGAAATGCTATTTGGTCCTCAAATGAAACCACTGCTACAAATCCAGTTCTTCAGCTTTTGGATACAGGAAACTTGATTCTCAGAGAAGCAAACAAAAATAGTGCAATTGATGGCAACTATCTATGGCAGAGCTTTGATTATCCAACAGATACTTTGTTACCGGGAATGAAGCTTGGTTGGAACTTGGACACTGGTATTGAGCTCTATATAACATCATGGAAGAGCCAAGATGACCCTTCAAGTGGTGATTTTTCTTTTAGGATGGAAAAACTTGGGCTACCAGAAATTTTCTTATGGAATAAGCAACTTAAGGTACATAGAAGTGGACCATGGAATGGAGTGAGATTCAGTGAAATACCAGTGGTGTCATCAAATGCTGTTCTTCAAGATAATATGTCTGTGGATTCACATGAAGTGTACTACATACTTTCAGCTATCAATCAGTCCAAGTTTTCAAGAAAAACTGTGAGCTGGAATGGCGAAATTCAACGTCTTGTGTGGGTGGAAAGTAGCCAAAGCTGGAAGAAGCTATGGTTTGCACCAAGTGGTGAATGTGACAAGTATGGTATCTGTGGTCCATATGGTATCTGTGACTCCAATGCTTTCCCAGTATGCAGTTGTATTCAAGGCTTCAGTGTCAAGAACCAGACAGAGTGGGATTTCAGGGATTTTTCTAATGGTTGTGTAAGAAAGACAAGATTGGATTGTGGGAGAGACAAGTTTCTGAAGCTGCAACATGTGGAACCACCAGAAACAACAAGAGTGTTTGTGAACAGAAGCATGACTCTTCAAGAATGTGAAGCTATGTGCTTGAAAAATTGCTCTTGCACTGCCTATGCTAATGTTGAGATCACAGATGGAGGAACTGGTTGTGTGATGTGGAGTGATGAACTCTTAGACACGAGGAAGTTTTCTGTTGCTGGCGAAGATCTCTTTATCAGATTAGCATCTTCTGATGTAGTTGACATAAACAATGGATCTGGTGGTAGCTCAGGAAAGAACAATAATGTAGGCAAAATAGTAGGCATTACATTTGGTGCTGTTGCTAGTGTAATTTTGGGCTTGAGCTTGTTTCTTTTATGGAAGAAGAGAAAATTGAAAAGTATATGGAAAAGGAAAACCAATCAGAAAGGTTCCTTTGAGAGAGTAATTTCAGCCAGCAGAGAACTCTCAGGTGAACGCACCATGGATGACTTAGAGTTGCCATTGTTTGATTTCACAACACTAACAATGGCCACTAACAACTTCTCTGAAGAAAATAAGCTCGGAGAAGGTGGTTTTGGAAGTGTTTACAGGGGTAGGTTGGTTGAAGGACTAGAGATTGCTGTGAAAAGGTTGTCCAAAAGCTCTGGCCAAGGAAATGAAGAATTCAAGAATGAGGTCAAGTCAATGGCAAAGCTTCAACACAGAAATCTTGTAAGATTGTTTGGTTGCTGCATTGAAAAGGAGGAGCAGATGTTGGTTTATGAATACATGGAAAACAACAGCCTTGAATCTATTTTATTTGACAAAGACAAATGTTGTTTGCTTGACTGGCAAATGCGATTCGATATTATACGTGGAATATCTAGAGGACTTCTTTATCTTCACCAAGACTCCAGACTTAGAATTATCCACAGGGATCTCAAGGCAAGTAATATTCTGCTGGATAGAGAAATGAACCCAAAGATATCGGATTTTGGAATGGCTAGAATTTTCTGCAGTGATCAAACTCAAGCAAACACAAGGAGAGTTGTTGGAACATATGGCTATATGTCGCCAGAATATGCAATGGACGGACTCTTCTCAGTTAAGTCTGATGTTTTCAGTTTTGGCGTTCTTGTGCTAGAGATCATAAGCGGCAAAAAGAACAAAGGATTTTATTCCTCAGAAGAGATAAATCTTCTGGGACATGCATGGAGATTATGGAAAGAAGGGAGGGCATTAGAACTGATAGATTCATCATTTGGTGATTCCTATTCAGAAACAGAAGTACTGAGATGCATACAAGTTGGGCTGATATGTGTGCAAGAAAGAGCAGAAGATAGACCAACAATATCTTCTGTGGTGTTGATGTTAAGTAGCGAAAATGCATCAATGCCACAGCCTAGAAACCCCGGGTTTGTCCTTGGAAGGAGTCCTGCTGAAACTGTTTCTTCTTCAGCTAATGAAGAAGAATACTCAGTGAACCAAGTCACAATAACAGTAGTAGATGGCAGGTAG 2529 0.4021 MSASTNLIVYFFCAFIFSFSSFFNIVISVDTLSARQSLGINQTLVSSKQVFEFGFFNGTNISTWYLGIWYKDIPQRTVVWVANRDTPLKDTNGTLKIGARGNLVLLDHAGNAIWSSNETTATNPVLQLLDTGNLILREANKNSAIDGNYLWQSFDYPTDTLLPGMKLGWNLDTGIELYITSWKSQDDPSSGDFSFRMEKLGLPEIFLWNKQLKVHRSGPWNGVRFSEIPVVSSNAVLQDNMSVDSHEVYYILSAINQSKFSRKTVSWNGEIQRLVWVESSQSWKKLWFAPSGECDKYGICGPYGICDSNAFPVCSCIQGFSVKNQTEWDFRDFSNGCVRKTRLDCGRDKFLKLQHVEPPETTRVFVNRSMTLQECEAMCLKNCSCTAYANVEITDGGTGCVMWSDELLDTRKFSVAGEDLFIRLASSDVVDINNGSGGSSGKNNNVGKIVGITFGAVASVILGLSLFLLWKKRKLKSIWKRKTNQKGSFERVISASRELSGERTMDDLELPLFDFTTLTMATNNFSEENKLGEGGFGSVYRGRLVEGLEIAVKRLSKSSGQGNEEFKNEVKSMAKLQHRNLVRLFGCCIEKEEQMLVYEYMENNSLESILFDKDKCCLLDWQMRFDIIRGISRGLLYLHQDSRLRIIHRDLKASNILLDREMNPKISDFGMARIFCSDQTQANTRRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIISGKKNKGFYSSEEINLLGHAWRLWKEGRALELIDSSFGDSYSETEVLRCIQVGLICVQERAEDRPTISSVVLMLSSENASMPQPRNPGFVLGRSPAETVSSSANEEEYSVNQVTITVVDGR* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0078 842 SMART ntp_6 345 424 IPR003609 -
Amo10g0078 842 Pfam D-mannose binding lectin 77 183 IPR001480 -
Amo10g0078 842 Gene3D - 25 154 IPR036426 -
Amo10g0078 842 Pfam Protein tyrosine and serine/threonine kinase 528 792 IPR001245 GO:0004672|GO:0006468
Amo10g0078 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 188 IPR036426 -
Amo10g0078 842 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
Amo10g0078 842 Pfam Domain of unknown function (DUF3403) 797 842 IPR021820 GO:0004674
Amo10g0078 842 Pfam PAN-like domain 345 410 IPR003609 -
Amo10g0078 842 Gene3D Transferase(Phosphotransferase) domain 1 601 806 - -
Amo10g0078 842 CDD PAN_AP_plant 341 425 - -
Amo10g0078 842 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 841 - -
Amo10g0078 842 SUPERFAMILY Protein kinase-like (PK-like) 510 829 IPR011009 -
Amo10g0078 842 CDD STKc_IRAK 531 795 - -
Amo10g0078 842 ProSiteProfiles Bulb-type lectin domain profile. 29 149 IPR001480 -
Amo10g0078 842 SMART serkin_6 525 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0078 842 Gene3D Phosphorylase Kinase; domain 1 501 600 - -
Amo10g0078 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Amo10g0078 842 Pfam S-locus glycoprotein domain 216 323 IPR000858 GO:0048544
Amo10g0078 842 CDD B_lectin 35 157 IPR001480 -
Amo10g0078 842 PANTHER - 17 841 - -
Amo10g0078 842 ProSiteProfiles Protein kinase domain profile. 525 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0078 842 SMART blect_4 35 157 IPR001480 -
Amo10g0078 842 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Amo10g0078 842 PIRSF SRK 1 842 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0078 Amo-Chr10 859816 863171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0078 433 830 Receptor kinase-like Gene Family AT4G23190 52.357 1.01e-135 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo10g0078 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0078 - - aip:107621503 1618.21