Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0073 ATGGCGGCTCAGCTACCAGAACACTTCAAGTGTCCGATTTCACTCGAAATAATGTCCGACCCAGTCATACTCTCCTCCGGCCACACATTCGACCGCTCCTCCATACAGCGCTGGCTCGATGCAGGCCACCGCACCTGCCCAATTACCAAACTGCCCCTCCCGGATCATGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCACTCCAACTCCAATTCCCAATCCCTCACCTCCCCACCCCCAACCCGAAACCCTAATCTCTTCCCTCACCTCCTCCGCTTCCTCTTCTTCCTCCAAGCTTGACTCGCTCCACAAACTCACTCGACTCGCCAAGCGCGACTCGCTCTTCCGCCGCCGTCTCACCGACTCGGGAATCGTCCCGCCGCTACTCTCCTGCGTCGACTCCCACGACCACGATTCCCTCCGCGAGAACGCTCTCTCTTTGCTTCTCATTCTCAGCCTCGACGACCACAACAAGGTTGGACTCGTCGCCGAGGGAGTCGTTGCCCGCCTCGTCGCCGTCATCTCCGGAACGGCTGCAGGAAATCCATCCCCGGACTGCCGCGCGCTCGCAGCCACCACACTCACAAGCCTGGCCGTCGTGGAGGTCAACAAGGCCACAATCGGCGCGTACCCTCACGCGATCGAGTCACTCGTGGCCCTCGTAAGGGACGGAAAGGGGAGAGAGAAGAAGGAAGCAGCGACGGCGCTCTATGCTCTCTGCTCCTTCCCGGACAACCGGCGGAGGGCGGTGGAGTGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGCTTGGAGAGGGCCGTTGAGGTTGTTGGAGTTCTTGCAAAGTGTAAGGAAGGGAGGGAACAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGTCGGGTTCTGAGGAATGGAAGCTCAAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCGTTGTGTTGTGGCAGTGAAGTTGCTTCTATGGAAGCCATCAGAGAAGGCCTTTTGGAAACATGTCTTGGCTTTCTGGAAGATGATAACGAGAAAGTGAGAAGGAATGCTTCCGCTTTGCTTCAGAATCTGCGTGGCAACAATAGGATCAGCTGA 1131 0.5782 MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASLIPNHALRSLISNFTPLTPTPIPNPSPPHPQPETLISSLTSSASSSSSKLDSLHKLTRLAKRDSLFRRRLTDSGIVPPLLSCVDSHDHDSLRENALSLLLILSLDDHNKVGLVAEGVVARLVAVISGTAAGNPSPDCRALAATTLTSLAVVEVNKATIGAYPHAIESLVALVRDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLERAVEVVGVLAKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASMEAIREGLLETCLGFLEDDNEKVRRNASALLQNLRGNNRIS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0073 376 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Amo10g0073 376 MobiDBLite consensus disorder prediction 75 105 - -
Amo10g0073 376 PANTHER U BOX DOMAIN-CONTAINING 2 373 - -
Amo10g0073 376 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Amo10g0073 376 Gene3D - 90 273 IPR011989 -
Amo10g0073 376 Gene3D - 274 375 IPR011989 -
Amo10g0073 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Amo10g0073 376 SUPERFAMILY ARM repeat 92 369 IPR016024 -
Amo10g0073 376 SUPERFAMILY RING/U-box 3 73 - -
Amo10g0073 376 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Amo10g0073 376 MobiDBLite consensus disorder prediction 76 90 - -
Amo10g0073 376 MobiDBLite consensus disorder prediction 91 105 - -
Amo10g0073 376 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 373 - -
Amo10g0073 376 SMART arm_5 212 250 IPR000225 GO:0005515
Amo10g0073 376 SMART arm_5 330 371 IPR000225 GO:0005515
Amo10g0073 376 SMART arm_5 121 162 IPR000225 GO:0005515
Amo10g0073 376 SMART arm_5 288 329 IPR000225 GO:0005515
Amo10g0073 376 SMART arm_5 163 208 IPR000225 GO:0005515
Amo10g0073 376 Coils Coil 348 368 - -
Amo10g0073 376 CDD RING-Ubox_PUB 9 50 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0073 Amo-Chr10 752676 754617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0073 1 371 U-box Gene Family AT4G21350 58.933 6.35e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0073 - - vvi:100855109 483.411