Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0072 ATGACGAATTCTAACGAGGTAGAGAATCACAGAAACAGCGTCGGCGTCGCCACAAAACAAACGAAGAAGATCAACAGAGAGGAGAAAGGCAATTCCTCCTCGATTTCCTCGTTCGTGTGCGAAATCTGCATTGTCACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTGCCGCGGTGCCGTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGTGAGAGCAAGAGATTCCTGTATTCCTGCGTCACGTGCACGGATGAAGACGTGATGATGAAGTTAGCGGAGAGGAACGGGTGGAAGAGGTGCCCAAAGTGCAGGTTCTACGTTGAGAAGGATCCTTTGACGTGCAATAAAATACTTTGCAGGTGTGGTGAAGTCTTCTGCTACGGCTGTGGCAGTTCCACCTGTGTCACTACTGGATTCGGCCATCCCTGCCGTCCCGCCTGCCGTCTTCCATCATGGGCTATTGGTCTGTCAATTCTATTTGGATTTATCATTCCTTACCTATGTTCGGATGAAAATCACCAATGA 681 0.4905 MTNSNEVENHRNSVGVATKQTKKINREEKGNSSSISSFVCEICIVTKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCRGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYSCVTCTDEDVMMKLAERNGWKRCPKCRFYVEKDPLTCNKILCRCGEVFCYGCGSSTCVTTGFGHPCRPACRLPSWAIGLSILFGFIIPYLCSDENHQ* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0072 226 SUPERFAMILY RING/U-box 37 117 - -
Amo10g0072 226 MobiDBLite consensus disorder prediction 1 20 - -
Amo10g0072 226 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 127 - -
Amo10g0072 226 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 136 185 - -
Amo10g0072 226 ProSiteProfiles TRIAD supradomain profile. 36 226 IPR044066 -
Amo10g0072 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 122 IPR013083 -
Amo10g0072 226 SUPERFAMILY RING/U-box 138 185 - -
Amo10g0072 226 MobiDBLite consensus disorder prediction 1 28 - -
Amo10g0072 226 ProSiteProfiles Zinc finger RING-type profile. 40 88 IPR001841 -
Amo10g0072 226 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 127 IPR031127 GO:0004842|GO:0016567
Amo10g0072 226 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 136 185 IPR031127 GO:0004842|GO:0016567
Amo10g0072 226 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0072 Amo-Chr10 742006 742686 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0072 33 195 ARIADNE family AT3G27710 21.860 9.79e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0072 K11975 - aip:107607785 153.68