Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0069 ATGACGAATTCTAACGAGGTAGAGAATCACAGAAACAGCGTCGTCGTCGCCACAAAACAAACGAAGAAGATCAACAGAGAGGAGAAAGGCAAGTCCTCCTCGATTTCCTCGTTCGTGTGCGAAATCTGCATTGTCACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTGCCGCGGTGCCGTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGCGAGAGCAAGAGATTCCTGTATTCCCGCCCTAGGCAGATGTGCGTCACGTGCACGGATGAAGATAGAGTGATGATGAAGTTAGCGGAGAGGAACGGGTGGAAGAGGTGCCCAAAGTGCAGGTTCTACGTTGAGAAGAAACCTTTCACGTGCAATAGAATACTTTGCAGATGTGGACATGTCTTCTGCTACGGCTGTGGCGGTTCCACCTGTGAATTCTGTGTCACTGCTGAATTAAGCCATGAAGGTCATCAAGCAAATCTCTTTTAG 633 0.4882 MTNSNEVENHRNSVVVATKQTKKINREEKGKSSSISSFVCEICIVTKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCRGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYSRPRQMCVTCTDEDRVMMKLAERNGWKRCPKCRFYVEKKPFTCNRILCRCGHVFCYGCGGSTCEFCVTAELSHEGHQANLF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0069 210 ProSiteProfiles TRIAD supradomain profile. 36 210 IPR044066 -
Amo10g0069 210 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 127 - -
Amo10g0069 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Amo10g0069 210 SUPERFAMILY RING/U-box 143 191 - -
Amo10g0069 210 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 140 192 IPR031127 GO:0004842|GO:0016567
Amo10g0069 210 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 127 IPR031127 GO:0004842|GO:0016567
Amo10g0069 210 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 140 192 - -
Amo10g0069 210 SUPERFAMILY RING/U-box 37 117 - -
Amo10g0069 210 ProSiteProfiles Zinc finger RING-type profile. 40 88 IPR001841 -
Amo10g0069 210 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0069 Amo-Chr10 729417 730431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0069 33 191 ARIADNE family AT3G27710 22.388 3.34e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0069 K11975 - twl:120005643 156.762