Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0049 ATGGGTTCATCGGAAAACCCCAATTGGGTTCTGGACTACGCATATCTCGATGACATTCACTCTCTTTCTGACCCTTCCAACTTCTCTTGGCCCCCTCCTCCAACCCCCCTAAGTGCCGACCTTCATCAATCGCTTCCCAATTCTCATGGACCCGATCAATCTGCCTCAAGAAAACGCTTGAGGTCAGGATCTTGCAACACTACTTCTGGTTCAAAAGCGTGTAGAGAGAAAATGCGAAGGGATAGATTGAATGACAAATTTTTGGAACTTGGTTCCATTTTGGAGCCCGGAAGGCCTCCCAAAACGGACAAGGCTGCTATACTGAGTGACGCGGTTCAACTGGTGTCGCAGCTGCGAGGGGAGGCTCAGAAGCTTAAAGAATCAACTGAGAATCTGCAGGAGAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTCCGCGACGAGAAGCAGCGGCTAAAAGCAGAGAAAGATAGCCTTGAGAAGCAGCTCAAAGCCTTGAATACACCACCTGGTTTCCTGCACCATCCTCCTACACTTCCAGCTGTTTTCCCTCATGCACCAGGGCAAGTTCTTGGAAGCAAGCTGGTGCCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTCGACACATCGCAGGACCATGTACTCCGGCCCCCGGTTGCATAA 690 0.5 MGSSENPNWVLDYAYLDDIHSLSDPSNFSWPPPPTPLSADLHQSLPNSHGPDQSASRKRLRSGSCNTTSGSKACREKMRRDRLNDKFLELGSILEPGRPPKTDKAAILSDAVQLVSQLRGEAQKLKESTENLQEKINELKAEKNELRDEKQRLKAEKDSLEKQLKALNTPPGFLHHPPTLPAVFPHAPGQVLGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0049 229 Gene3D - 70 147 IPR036638 GO:0046983
Amo10g0049 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 143 IPR036638 GO:0046983
Amo10g0049 229 MobiDBLite consensus disorder prediction 40 72 - -
Amo10g0049 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Amo10g0049 229 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 2 229 - -
Amo10g0049 229 CDD bHLH_AtILR3_like 72 147 - -
Amo10g0049 229 Coils Coil 108 170 - -
Amo10g0049 229 SMART finulus 73 124 IPR011598 GO:0046983
Amo10g0049 229 PANTHER BHLH TRANSCRIPTION FACTOR 2 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Amo10g0049 229 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Amo10g0049 229 MobiDBLite consensus disorder prediction 24 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0049 Amo-Chr10 544974 546308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0049 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 60.169 6.07e-91 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo10g0049 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0049 - - mnt:21402686 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0755 20 10881683 10883104 Amo10g0049 10 544974 546308 hybridization