Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0039 ATGATTCAGTATGGTAAAGATTATGAATTTGATGCTCCAGTGAAGCTCCTAGAGAAACATCTACATGCTATGGCACAGTCTGTTGATGAGCAACTTCTTGTTGTTTCTCAGGTTATTGCTTTCAATGATAAGCCTGTGAAGAATTTGAAGGGCTTGACCACCATGGTTGAGAACTGTGATGATGAGTTTCTAAAGTTTGATCTGGAATACCAACAGATTAAATGTACTCGCTTTAGTCCTTGTAATATTTATGATGTGACAGCAACTAAAAGAAATGAATTTGAGGATTATTTTTTGAAGCGAGAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTATTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAACAGCTGCATTTTACATTCCTGCATCGGAAAAAATTGACCAGAAACAATCTATCCTGGCATAG 489 0.3783 MIQYGKDYEFDAPVKLLEKHLHAMAQSVDEQLLVVSQVIAFNDKPVKNLKGLTTMVENCDDEFLKFDLEYQQIKCTRFSPCNIYDVTATKRNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALIGSDILARAKNGTGKTAAFYIPASEKIDQKQSILA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0039 162 Gene3D - 79 161 IPR027417 -
Amo10g0039 162 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 82 159 - -
Amo10g0039 162 Gene3D - 37 78 IPR046449 -
Amo10g0039 162 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 82 159 - -
Amo10g0039 162 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724
Amo10g0039 162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 156 IPR027417 -
Amo10g0039 162 Pfam PDZ domain 37 73 IPR041517 -
Amo10g0039 162 Pfam DEAD/DEAH box helicase 117 154 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0039 Amo-Chr10 460538 462453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0039 94 155 Eukaryotic Initiation Factors Gene Family AT5G11200 46.774 6.51e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0039 K12614 - ahf:112717194 285.419