Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0028 TGGATTTCCAAATACTCTTCTGGAGGCTCTTCTCTTTTTCAGTCTCTACTTTTCGAAGCATGTGGACGAACGGTTAACCCGGTTAACGGTGACGTTGGACTACTATGGACTGGAAACTGGCACATATGTCAGGCCGCCATTGAAACGGTGCTCCGAGGAGGCTCCCTCAGGCCTATGCCGGAGCTATTCGGTCTCAACGTGCCTGTTCCTGTTGCTGTTGACGCCGACTCCGAGAGAAAAGTCACGTGCACTGACGCGCGGAAGCTCCAAGACCCGAACCCGAGTCCGAGCATAAGGTTCACGAGCTCTCGATCTGGTAAAGACAGTTCCGGCTGGAAGCGGAAGCAATCAGAAGAGTGGGTCGCGGTGGGGAGGTGA 378 0.545 WISKYSSGGSSLFQSLLFEACGRTVNPVNGDVGLLWTGNWHICQAAIETVLRGGSLRPMPELFGLNVPVPVAVDADSERKVTCTDARKLQDPNPSPSIRFTSSRSGKDSSGWKRKQSEEWVAVGR* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0028 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 10 95 - -
Amo10g0028 125 MobiDBLite consensus disorder prediction 108 125 - -
Amo10g0028 125 Pfam Lateral organ boundaries (LOB) domain 11 49 IPR004883 -
Amo10g0028 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 10 95 - -
Amo10g0028 125 MobiDBLite consensus disorder prediction 82 125 - -
Amo10g0028 125 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0028 Amo-Chr10 375640 377098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0028 11 90 AS2 family AT5G67420 60.000 6.83e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo10g0028 LOB 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0028 - - adu:107468436 235.728