Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0025 ATGCTCAAAATTATGTTGAGTTTTGTTCCAATTCATATATTCTTGTGGTCATTATTCTGTTTCTTCATGATTGTTTATGGAGCTGAATTAGGTGACATCAATTGCCTAAGAGAAATCAACAACTCATCGGACTCATCTAATCAAATATGGGATTTCAATTTCAATATCAACACCATAGATTTGTGCTCATCATTCACTGGTATTGAATGCATGACCAGTGGTATTGATGAAGAAAAAGTAATAAGTATCAAGCTTTCTAACATGGGGTTAGAAGGCCAATTTCCTCATTGCATTGAGAATTTCTCATGGCTGCAGAATCTGAACCTTTCACACAACAAGCTCTTTGGGAATATCCCACCTGATATTTCAAGTAAGCTTCCATATCTAACCTCACTTGACCTATCAAACAACAACTTTTATGGTGAAATCCCAAAGGCTATTGCAAACTTGTCTTACTTGAATACCCTTAGACTTGATGGTAACCAGTTAAATGGAACAATCCCAAAAGAACTTGGCTTTCTTCCAAGGATCACAGTGTTCAGTGTTGCAAACAATTTGTTATCAGGGCCAGTGCCTGTGTTTGTGAACAATAATGTTAATGTTACCTTGAGCTATGTCAATAATAATGGACTCTGTGGGGGAACAACATTGGAAAGCTGTGATGAAGAGAGCTTATTTGGTAAACCCTTTTGGTATAGTTTTGTTATTGCTTTTGTTTGTTCAGCAACTTCTGTCATAGTAACTTTCATGGACTATACTCAACCTTGGAATGAATTCAAAAAGAGTAGTAGGAAGAGTAACACCATATATCCCTTGAGAAAAGAACAGAACAACCAAAAGCATACCACTAATGTAGCTCAATTGCTTCCACTGGCTTTGCAAGAGGAAGGAAATAAAGAGCTCTGTAGATTGTTGGAGAGATTGATACCAAGAATGAGCTTCATGGAGCTTTGCAAAGCAACTAACTACTTTAGCTCAAACAACATCATGGGGTTAGGAACAACAGGGATAATGTATAAGGCAGAGGTTTCAAATAACTGTTTGATAGCAGTGAAGAGATTCTATTATTCTGACAAGTACAAGAGACAATTCTTGCTTGAAACAATGATTCCAGGGAGACACATGCACCGAAACATAGCCTCTCTGCTTGGATTCTGCATAGAGAAGAAGGAGAGGATACTAGTCTATAGCTACATCTCAAATGGAACATTATGTCACTGGTTACATAATTCTCAATTGGAATGGCCTGAGAGGATTCACATTGCAATTGGGATAGCAAGGGGATTATCTTGGCTTCACAAAAAGTGCAACATCATACACCTCAATCTATCTTCTGAATGTGTCTTGCTAGACAAGAATTTCGAGCCAAAAATTTCGAATTTCGGCAAAGCAAAGTTCATCATGAACCAAAAGAATCATGCAAGGATGAGACTGTTTCTGGTTGATGAAGTCATTGGGGTGAAGGGTTCTTTTGAGAAGGATATCTATGACTTTGGAATAATCCTTTTTGAGCTTATAACAGGACAAAAATTAAGCATAAGTAGTGATTCTTGTTCTACTAATTATGATGATGACATTGGTGTTGATAATAGCTCTTTGAGGAGCTATATTAGCAATAGGTTGTTCACTGATCCTAGTGATTTTTATTATGCCACTGACAAATGCATAACTGGGAAAGGGTTTGATGATAAAATTCATGGCCTCCTAGAAGTTGCATGCAAATGTGTTAAACCTTCTATGGAACAGAGGCCAAAGATGGATGATGTGTATAGAACTATTACAGCCTTGTGGAAAGGTTGA 1800 0.3722 MLKIMLSFVPIHIFLWSLFCFFMIVYGAELGDINCLREINNSSDSSNQIWDFNFNINTIDLCSSFTGIECMTSGIDEEKVISIKLSNMGLEGQFPHCIENFSWLQNLNLSHNKLFGNIPPDISSKLPYLTSLDLSNNNFYGEIPKAIANLSYLNTLRLDGNQLNGTIPKELGFLPRITVFSVANNLLSGPVPVFVNNNVNVTLSYVNNNGLCGGTTLESCDEESLFGKPFWYSFVIAFVCSATSVIVTFMDYTQPWNEFKKSSRKSNTIYPLRKEQNNQKHTTNVAQLLPLALQEEGNKELCRLLERLIPRMSFMELCKATNYFSSNNIMGLGTTGIMYKAEVSNNCLIAVKRFYYSDKYKRQFLLETMIPGRHMHRNIASLLGFCIEKKERILVYSYISNGTLCHWLHNSQLEWPERIHIAIGIARGLSWLHKKCNIIHLNLSSECVLLDKNFEPKISNFGKAKFIMNQKNHARMRLFLVDEVIGVKGSFEKDIYDFGIILFELITGQKLSISSDSCSTNYDDDIGVDNSSLRSYISNRLFTDPSDFYYATDKCITGKGFDDKIHGLLEVACKCVKPSMEQRPKMDDVYRTITALWKG* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0025 599 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Amo10g0025 599 ProSiteProfiles Protein kinase domain profile. 324 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0025 599 SUPERFAMILY Protein kinase-like (PK-like) 305 592 IPR011009 -
Amo10g0025 599 Gene3D Ribonuclease Inhibitor 33 222 IPR032675 -
Amo10g0025 599 Gene3D Phosphorylase Kinase; domain 1 287 398 - -
Amo10g0025 599 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 7 595 - -
Amo10g0025 599 SUPERFAMILY L domain-like 52 214 - -
Amo10g0025 599 PANTHER RECEPTOR-LIKE PROTEIN 55 7 595 - -
Amo10g0025 599 Pfam Protein tyrosine and serine/threonine kinase 328 525 IPR001245 GO:0004672|GO:0006468
Amo10g0025 599 Gene3D Transferase(Phosphotransferase) domain 1 400 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0025 Amo-Chr10 334836 337371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0025 19 596 Receptor kinase-like Gene Family AT3G28450 31.323 7.60e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo10g0025 PK_Tyr_Ser-Thr 7.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0025 - - ahf:112717205 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0728 20 10579964 10582605 Amo10g0025 10 334836 337371 hybridization
Amo13g4445 13 140463898 140471097 Amo10g0025 10 334836 337371 PCT
Amo10g0025 10 334836 337371 Amo13g4445 13 140463898 140471097 PCT