Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2841 ATGATGCCCGGCAGTCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGMCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCGTTAGAAGACCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTTATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGACAGGCGAGGTGGACATAGTCCTGGGAGAGGTCATGATCGTCAGCGTGACAGGAGCCGTGATGGAAGGCGGTCACCCAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGCAGTCCTGACTATGGCCGAGGCCGCAGCCGTAGTCGTAGCCATAGTCCCCTTCGAAGAGAGCAGCAAGTTAGTCCTGTTTATGGGCGTAGAAGCGCTAGTCCATATGGAAGACAGAGGGATGGCCCTGATCCTTCCCGTGGGTCTAGCCGAAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGGTCCTAGTCAAAGTCCTTATGATACTCAGAAGGCTAGCCCTGTAAATGGCCACGAGACCAGGGATAGTCCCGATGGAAAAGGGAACCCTAGCCCTTACAATGGTTATAAAGGAAGCCCAAACACGGGGCTTGAACCAAGGGATAGCCCCAACTATAGTGGTCCTGAAAGTCCCATGCATGAAGCATATCACAGTCAGTCYCCCCCTGCAGAAGAATGA 1080 0.4944 MMPGSLERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGHSPGRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSHSPLRREQQVSPVYGRRSASPYGRQRDGPDPSRGSSRSPYHKERGRADHGISPSHSPDGRETSPQNGRGPSQSPYDTQKASPVNGHETRDSPDGKGNPSPYNGYKGSPNTGLEPRDSPNYSGPESPMHEAYHSQSPPAEE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2841 359 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 308 - -
Amo09g2841 359 SUPERFAMILY RNA-binding domain, RBD 5 79 IPR035979 GO:0003676
Amo09g2841 359 SUPERFAMILY RNA-binding domain, RBD 64 160 IPR035979 GO:0003676
Amo09g2841 359 PANTHER BNAC08G47240D PROTEIN 5 308 - -
Amo09g2841 359 MobiDBLite consensus disorder prediction 275 304 - -
Amo09g2841 359 MobiDBLite consensus disorder prediction 255 274 - -
Amo09g2841 359 MobiDBLite consensus disorder prediction 155 223 - -
Amo09g2841 359 Gene3D - 74 163 IPR012677 -
Amo09g2841 359 Gene3D - 3 73 IPR012677 -
Amo09g2841 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 146 IPR000504 GO:0003723
Amo09g2841 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 50 IPR000504 GO:0003723
Amo09g2841 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 62 IPR000504 GO:0003723
Amo09g2841 359 MobiDBLite consensus disorder prediction 155 359 - -
Amo09g2841 359 MobiDBLite consensus disorder prediction 321 335 - -
Amo09g2841 359 CDD RRM2_AtRSp31_like 83 152 - -
Amo09g2841 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 153 IPR000504 GO:0003723
Amo09g2841 359 SMART rrm1_1 4 58 IPR000504 GO:0003723
Amo09g2841 359 SMART rrm1_1 83 149 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2841 Amo-Chr9 107583241 107587283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2841 6 156 Eukaryotic Initiation Factors Gene Family AT1G49760 24.852 6.00e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2841 K12893 - gmx:100796509 544.273