Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2838 ATGGAAGCGAATCATGGCGGTTTCAGCGAAGAACCGAACGACACTCAAAGCGCCGACGTATCACCCTCTGAGAMAACGCCAATAGCGAAAGCGCCGGAACCTAGGTTCCCGGAGCCGGTACCTCCGTCTCCGGTGGCGGTGCCTATGAAGGAGGAGCTCGCGGACTCCGAGAAGAGCCTTGAGGAGCGTCTCCAGGTGGCGATTGTTCCCACGCCGGTGGCAAGGAGGCCGTCGAAGGACCGCCACACGAAGGTAGAGGGGCGWGGCCGGAGAATCCGGATGCCGGCGACGTGCGCCGCCAGGATCTTCCAGCTGACACGGGAGTTAGGCCACAAGTCCGACGGGGAAACAATACGGTGGCTGCTGGAACAGGCTGAGCCGGCCATCATCGAGGCCACCGGTACAGGAACGATCCCGGCRATCGCGGTTTCGGTGGGYGGCACACTCAAGATCCCAACGACGTCGACGGCGACGCCACAAGGCGAAGAAGAGGCGTCGAGAAAACGAAGAAGAAGGGCATCGAACAGCGAGTTCATTGATGTGAATGAAGAACAATCCTCAGTGTCTTCGGGTCTCGCACCAATCACACAAACCGCATACGGCGWTAGTTCTAGTGGTGGTGGACTCGTTCCAATGTGGACTATTGGTGGCGGYGGTGGTGGTTCTAATGGTCCTTTTTTCATGTTCCCAAATGCTGCTGCTACTTCTTCCGGGGATGGTGTTGCGAACCATCCTCATTATTGGGCTTTTCCAGCGAATGCGGCGCCGTATTTCAACGTTCAAGCTCGGCCTATTTCGGGGTTTGTTGCGGCTGAGCAATTAGGCCATGTGGTAGTGCAGCAGCAGCAGCCGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCTAGTTGTTGTTCTTCTAATGGCTCTGCTAACTCTTGTTCTACTCTGGCTCCTAGTTTGAGCTCTGGAACCAGTGCTACTAATAATGGCTCTACTTCTACTTCTAGTGCTGCCACTCAGATGCTTAGGGATTTCTCTTTGGAGATTTACGACAAGAAAGAGTTGCAATTCTTGGCTTGCTCTTCCTCTTCTTCTGCCGTTGCTGAAGCTAAGTTGGAACAACCACCACCTCAGACTCTCAGTTCTAAGCCTTCAAACTGA 1140 0.5561 MEANHGGFSEEPNDTQSADVSPSEXTPIAKAPEPRFPEPVPPSPVAVPMKEELADSEKSLEERLQVAIVPTPVARRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPAIIEATGTGTIPAIAVSVGGTLKIPTTSTATPQGEEEASRKRRRRASNSEFIDVNEEQSSVSSGLAPITQTAYGXSSSGGGLVPMWTIGGGGGGSNGPFFMFPNAAATSSGDGVANHPHYWAFPANAAPYFNVQARPISGFVAAEQLGHVVVQQQQPQPPPPPPPPPSCCSSNGSANSCSTLAPSLSSGTSATNNGSTSTSSAATQMLRDFSLEIYDKKELQFLACSSSSSAVAEAKLEQPPPQTLSSKPSN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2838 379 MobiDBLite consensus disorder prediction 9 23 - -
Amo09g2838 379 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 356 IPR005333 GO:0003700
Amo09g2838 379 MobiDBLite consensus disorder prediction 150 185 - -
Amo09g2838 379 MobiDBLite consensus disorder prediction 298 331 - -
Amo09g2838 379 MobiDBLite consensus disorder prediction 1 60 - -
Amo09g2838 379 MobiDBLite consensus disorder prediction 32 46 - -
Amo09g2838 379 Pfam TCP family transcription factor 78 163 IPR017887 -
Amo09g2838 379 PANTHER TRANSCRIPTION FACTOR TCP9 19 356 - -
Amo09g2838 379 MobiDBLite consensus disorder prediction 277 331 - -
Amo09g2838 379 MobiDBLite consensus disorder prediction 162 178 - -
Amo09g2838 379 MobiDBLite consensus disorder prediction 359 379 - -
Amo09g2838 379 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Amo09g2838 379 MobiDBLite consensus disorder prediction 282 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2838 Amo-Chr9 107494572 107496319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2838 72 351 TCP Transcription Factor Family AT5G51910 48.621 2.59e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo09g2838 TCP 7.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2838 - - aip:107617519 616.69