Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2835 ATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCSCAAGTTGGSGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGTGTTTCCACCCAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATCCTTGAACTGTCTAGAAGGAAGATGCTGGGACACTGCTTGAGTTCTTGTTCTTTTGATGAACTCCAACAAATGGAGGACAAGCTCCATACAAGTTTGCAATGTATCCGTCTGAGAAAGACTCAACTATTTAAGGAGCAAATTGAGCAACTACAGAGCAAGATTAATGCCTGGCATATTTTTCAGGAGAGAAACTTGCTCAAAGAAAATGTCCGGTTAAGTGCAATGTGCATGGAAAAACCATTGAAGCACATAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGATGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTATGCTGATCATAATCAAATATATACATAG 669 0.3901 MVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGVFPPNKLREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQMEDKLHTSLQCIRLRKTQLFKEQIEQLQSKINAWHIFQERNLLKENVRLSAMCMEKPLKHIEEEATETTHHTLDVETDLFIGLPKQYADHNQIYT* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2835 222 PANTHER MADS BOX PROTEIN 1 213 - -
Amo09g2835 222 ProSiteProfiles K-box domain profile. 88 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo09g2835 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo09g2835 222 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Amo09g2835 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo09g2835 222 Pfam K-box region 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo09g2835 222 PANTHER MADS-BOX PROTEIN SOC1 1 213 - -
Amo09g2835 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo09g2835 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo09g2835 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo09g2835 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo09g2835 222 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Amo09g2835 222 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Amo09g2835 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2835 Amo-Chr9 107483545 107488205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2835 1 158 MADS-box Gene Family AT2G45660 57.862 3.95e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo09g2835 K-box 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2835 - - adu:107467111 415.616