Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2827 ATGGAATTTTTAGGGTTACCTGCGACTCTTGTTGCCCTATTGGCATCATTTTGCTTCCTGTTGATCTTGATACTAACATATGCATGGTGGGTTTCCCCATTTCTAACACATAACAAGCTTAAGAGATGTGGATTTGTAGGGCCAAACCCAAGTTTCCCACTTGGAAACATCAAAGAGATGAAAAACAATAAGAATATTAAATCTTCCTCAGCATCAACCCATGATATACACTCACAAGTTTTTCCCTACTTCTCTTTCTGGCAGAAATCTTATGGTAAGGTATTTGTTTATTGGCTAGGGACGGAGCCATTCTTGTACATTGCGGAGCCAGAGTTGTTGAAGAGAATTTCCACGGAGGTCATGGCCAAGAGATGGGGGAAGCCAAGTGTGTTTAGAAATGACAGAGACCCCATGTTTGGGAGTGGCTTGGTCATGGTTGAAGGCAACGATTGGGTTCGTCATCGCCACATTGTTGCACCCGCATTCAATCCCATTAATCTCAAGGCGATGGCAAGCGTGATGAGTGAGTCGACAAATGAAATGATATCTCGATGGAGCAGCCAAATTAAGATCGGAAAACACGAAATCAACGTGGAGAGTGAGGTCATAACCCTCGCCGGAGAGATCATCGCCCGAACTATCTTCGGCTTGAAAGACGAGAGCGCTAGAGGCATTTTCAACAGGCTCAGCGCCCTTCAAATGACTCTCTTCAACACCAATCGCTACGTCGGGGTTCCATTCGGCAAGTACTTCAAGGTCAAGAAAACCCTAAAGGCCAAGAAATTAGGCGAAGAAATCGACCAGCTCTTGTTGTCTATCATTGAAGCTCGCAAGGCCTCGCCCAAGCCCAAGGGTTCTCAGAACGATTTGCTGTGTTTGCTGCTCCAAGAAAATAAGCTCACGACGAGGGAGCTTGTTGATGAATGCAAGACCTTCTTTTTCGGCGGCCATGAAACCACTGCGCTTTCTCTCACCTGGACTTTGCTGCTGCTCGCTATGCATCAAGATTGGCAGAACCAATTGAGACATGAGATTCAACAACGTCTTGCTCAACACAATCACGTTATTGATCTCGCCATGCTCTCTAGCTTAACCAAGATGAAGTGGGTGATGAATGAAGCTCTAAGGCTGTACCCTCCTTCACCAAATGTGCAAAGGCAAGCAAGAGACGACATTCAAATTGATGGTTTAACAGTGCCTAAAGGAACCAACATGTGGATTGATGTGGTGGCCATGCACCATGACCCGGAGCTATGGGGACACGATGCTAATGAGTTCAAGCCAGAGAGGTTCATGGAGGATGTGAACGGTGGATGCAAACACAAGATGGGTTACTTGCCATTTGGATTTGGAGGGAGAATGTGTGTTGGTAGGAACTTGGCATTCATGGAGTACAAGATTGTGTTAACTCTACTTCTCTCTAAGTTTAGTTTCAACATTTCTCCAACTTACCGTCACTCACCAACTATCATGCTCTCTCTAAGGCCTACCCATGGAGTCCCACTCATAGTTCAGCCCCTTTAG 1524 0.458 MEFLGLPATLVALLASFCFLLILILTYAWWVSPFLTHNKLKRCGFVGPNPSFPLGNIKEMKNNKNIKSSSASTHDIHSQVFPYFSFWQKSYGKVFVYWLGTEPFLYIAEPELLKRISTEVMAKRWGKPSVFRNDRDPMFGSGLVMVEGNDWVRHRHIVAPAFNPINLKAMASVMSESTNEMISRWSSQIKIGKHEINVESEVITLAGEIIARTIFGLKDESARGIFNRLSALQMTLFNTNRYVGVPFGKYFKVKKTLKAKKLGEEIDQLLLSIIEARKASPKPKGSQNDLLCLLLQENKLTTRELVDECKTFFFGGHETTALSLTWTLLLLAMHQDWQNQLRHEIQQRLAQHNHVIDLAMLSSLTKMKWVMNEALRLYPPSPNVQRQARDDIQIDGLTVPKGTNMWIDVVAMHHDPELWGHDANEFKPERFMEDVNGGCKHKMGYLPFGFGGRMCVGRNLAFMEYKIVLTLLLSKFSFNISPTYRHSPTIMLSLRPTHGVPLIVQPL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2827 507 Gene3D Cytochrome P450 30 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 SUPERFAMILY Cytochrome P450 77 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Amo09g2827 507 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 Pfam Cytochrome P450 79 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PANTHER CYTOCHROME P450 FAMILY MEMBER 9 502 - -
Amo09g2827 507 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo09g2827 507 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 9 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2827 Amo-Chr9 107328220 107330998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2827 1 507 Cytochrome P450 AT5G52400 56.046 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2827 - - gmx:100802882 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4436 19 161405745 161407765 Amo09g2827 09 107328220 107330998 hybridization
Amo19g4436 19 161405745 161407765 Amo09g2827 09 107328220 107330998 PCT
Amo09g2827 09 107328220 107330998 Amo19g4436 19 161405745 161407765 PCT
Amo09g2827 09 107328220 107330998 Amo09g2827 09 107328220 107330998 PCT