Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2822 ATGCCACCATTGGAAATTTTGGATAGATATTGTGTAATAAAGGAAAGGATGACACAAGCGCTTCGATACTSCAAAGAGTTGACAGAACAGAATGTTCTGGCGCAGGTTTGGGCACCTGTTAGAAATGGTAATAGGTTTGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCACCAGTATCGAACGGTGTCCCTGATGTAYGTGTTTTCGGCGGATGGAGAGAAAGAAGAAAGTCTTGGACTTCCTGGTCGAGTTTATCAGCAAAAAGTACCAGAATGGACACCTGATGTTCAGTATTATTCTACTAAGGAGTATCCTCGCAGAGATCATGCACAACATTACAATGTCCGCGGTACCTTGGCTTTGCCTGTCTTTGAACCTTCAATGCAGTCTTGTGTAGGTGTGTTGGAGTTGATCATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGACAAAATTTGCAGAGCYCTTGAGGCAGTGAATTTGAAGAGTTCAGAAATTTTAGGCCACCAATACRCTCAGATTTGTAATGAAGGCCGCCAGAATGCGCTAGCAGAGATCTTGGAGATATTGACAGTGGTTTGCGAAACTCACAATTTACCTTTGGCGCAAACATGGGTTCCATGTAGGCATCGGAGTGTTCTGGCCCATGGAGGTGGCCTAAAGAAAAGTTGTTCAAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGATATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGAGAGGCCTGTGTCGAACATCACTTACAGCAAGGTCAAGGGGTTGCTGGCAGGGCTTTTTCTTCACATAGCATGAGCTTCTGYAGGAACATTACCCGATTCTGCAAAATTGATTACCCTTTAGTTCATTAYGCTCTCATGTTTGGGTTAACTAGCTCCTTTTCAATCTGTTTGCGAAGCTCGCACACCGGAGATGATGACTATGTATTAGAGTTTTTTCTGCCACCTAGGATCACAGACTTTAACGAACAGAAGGCTTTGTTGGGATCCATATTGACAATAATGAAACAACATTTCCAGAGCCTTAAGATTGCTTCTGGTGTTGAACTTGAACAGAATGCTTTGGTTGAAACTATTGAAGCAACAATTGAAGGAGTTCATCTGAGGTTTGAATCTATTCCAGTTAGACAGGATGCTTCACCAAACGTGAGGGAGGAATTGGCACAAGATCCGTCGTTGCAGAAAATAATGATGGGCTGCAATGATGGAGGGAGTATTGGTGATCAGATACCCTCCTTAGAAACCAAAAACACAAATAAGCCATCAGAGAGGAAACGTGGGAAAACTGAGAAATCAATAAGTCTTGAAGTTCTGCAACGTTATTTTGCTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAAGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTCCAAGGTGCCGAAGGAGCATTCRCTTTGAATCCTCTGAGCACAAGTCCTCTTCCCTTTCCTGAGCATTCTACTCCAAACAAGTTCAGCCAGCAAGCCTCKCCAACTGAACCTCAGATAAGAGAAAATGAATTAGATGCCTCTAAAGTTTTAGAAACAACCAGAATTGCCAGAGCACAGTGTCTCGAGAAAATGGTTAATGATAAAAGCGGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGGGGCCTAGAGCAAAGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCTCCTATCGAAAGCTCGCCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTCTAAGGTCACCAGAGGCAACAATGCAGCCGCCGAATAATACACTGAGCTACCCAACGACTTGCRCTATGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTCGGAGGAATGCTRGTAGAAGATGCCGGAAGTTCYAAAGACTTGAGAAACCTATGTCCTTCTGTAGCTGAGGCAATTGTGGAGGACATGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCTGGGTTGGCTCCCAARCAATGCATGGATCCCCTTAAGGAGACAGTGACACCTTTTGCAKCTAGAASAGAAATGAAGACTGTCACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTGAATTGTGGAATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGCATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGAGTTTTGGTGCATGAAATAACTTCCAATCTTGGAAGCTCATGCGAGAGCTCAGGGTAG 2520 0.4294 MPPLEILDRYCVIKERMTQALRYXKELTEQNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFSADGEKEESLGLPGRVYQQKVPEWTPDVQYYSTKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICRALEAVNLKSSEILGHQYXQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFSSHSMSFCRNITRFCKIDYPLVHYALMFGLTSSFSICLRSSHTGDDDYVLEFFLPPRITDFNEQKALLGSILTIMKQHFQSLKIASGVELEQNALVETIEATIEGVHLRFESIPVRQDASPNVREELAQDPSLQKIMMGCNDGGSIGDQIPSLETKNTNKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFXLNPLSTSPLPFPEHSTPNKFSQQASPTEPQIRENELDASKVLETTRIARAQCLEKMVNDKSGSIREVGKETKGPRAKSCSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNDQCVGLRSPEATMQPPNNTLSYPTTCXMPDMVATELQEPFGGMLVEDAGSSKDLRNLCPSVAEAIVEDMAPEPCRTNPPFSGLAPKQCMDPLKETVTPFAXRXEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSNLGSSCESSG* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2822 839 CDD PB1_NLP 746 826 IPR034891 -
Amo09g2822 839 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 4 838 - -
Amo09g2822 839 ProSiteProfiles RWP-RK domain profile. 442 523 IPR003035 -
Amo09g2822 839 Pfam RWP-RK domain 455 503 IPR003035 -
Amo09g2822 839 Pfam PB1 domain 745 826 IPR000270 GO:0005515
Amo09g2822 839 ProSiteProfiles PB1 domain profile. 745 827 IPR000270 GO:0005515
Amo09g2822 839 MobiDBLite consensus disorder prediction 527 559 - -
Amo09g2822 839 Gene3D - 742 826 - -
Amo09g2822 839 SMART PB1_new 745 827 IPR000270 GO:0005515
Amo09g2822 839 SUPERFAMILY CAD & PB1 domains 742 830 - -
Amo09g2822 839 MobiDBLite consensus disorder prediction 586 632 - -
Amo09g2822 839 MobiDBLite consensus disorder prediction 533 557 - -
Amo09g2822 839 MobiDBLite consensus disorder prediction 424 452 - -
Amo09g2822 839 MobiDBLite consensus disorder prediction 602 621 - -
Amo09g2822 839 PANTHER PROTEIN NLP8 4 838 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2822 Amo-Chr9 107244024 107247368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2822 147 839 NLP Transcription Factor Family AT4G24020 53.868 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo09g2822 PB1 7.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2822 - - aip:107618129 1681.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4432 19 161355529 161356605 Amo09g2822 09 107244024 107247368 hybridization
Amo19g4432 19 161355529 161356605 Amo09g2822 09 107244024 107247368 PCT
Amo09g2822 09 107244024 107247368 Amo19g4432 19 161355529 161356605 PCT
Amo09g2822 09 107244024 107247368 Amo09g2822 09 107244024 107247368 PCT