Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2816 ATGGGTAGCATCCAAKTAGCTGAAGCTGAAGAACAAGACACACACACAGTCTTTGTTGCGGTGGGAAACAACATTCACAAGACCCAACAACTATTGCATTGGGCTTCGCACAATTTCCCTTCCAAATCAATTTGCCTCCTTCACGTTCACCATCCTCACCCTATCGATTCCTCCCCAGATAGAAACCCTTATAGGGATGAAACACGATCTCATTCATTCTTGGACAATGAAAGTAAAAAAATCCATGAACTCTTGGACCAATATGTTGCCACTCTTGTCCAAACAGGGGTAAGGGCACATAAATTGTTGATTGAGATGGACAATATTGAGAAAGGGATTATGGAAGCGATTGCTCAACACAATATTAGATTGCTTGTAATTGGAGCTGCAGCAGACAGATATAACTTGGGGAAATTGGCTGAGCAAGAGTCAACAAAGATTATTCCTGTACATAAACAAGCAGTTCCATCATGTAATATTTGGTTCATTTGCAATGGCAACATCAAATGTACCAGGGTAGATAGTAAACGTACACCTGAAATAGAGACTGCCCCTCCACTGTTGGTGCACAATTCAAATGCAGAAGCCGAACAATCACAGAAGTTTGAATATGAATCGATTCCTAATGGATTGGAACATTTAGATTCTGATGATGTGGAAGAAATTGAAACTGTCAGTTCCCACAGTTCATTACGTTCAAAATGGTCCTCCATTAGTGTTGCTGACAGTTCAAAGTTGTCAGGATTGCTGTTTTGTGAGGAGGAGGTAGATGGTGAAATTGAAGACAAAAGTGAAATAAATGGTAGACTAGAAGAGTCCACTAGAGATTCCAAAAGCATGAGGCGAAAAGAATTTGAAGAGGCTTTAAAGCAGTGGAAAGTCAAAGAAAGTTCTTTGGAGGATGAAGCATTAGAAATGGAAAGCCTGTGTGCTAAGGAGAAAAACAAAAGAAGAGAAGTTGAAGAACAATTGGCCAGAGAGAAGGAAGAATTACAAAAAACAAAGAATCAGCAAGATGAAATAATGTATGAGTTGCAAACTGTCCAAGAACAAAATTCAGCACTTGCTAACCAACTTTGTGAGACACAGGAAGCAGCAAAAGAGTTGGAGGAGAAGATTTTATCAGCTGTGGACCTCTTGATAAGTTTCAAGGAAAAACGAGATAGACTGCAGATAGAGTGCGCAAATGCAGTAAGGCAAGTCCGAGTGCTGAGGGAATTTGGAAAGTCACATACTTCATTTTCTTATGCGGTAGAATTCCCTGTATTTTCTTTCATGGAGATCAATCAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGATATGGAAGTGTTTACAAAGGAGTGCTTCGCAATATGCATGTTGCTATAAAAATGTTACCTTCTTATGGCTGTCACAGCCAATTGGAGTTTGAACGTCAGGTAGCAGTTTTGAGTCGGGTGAGACATCGAAACCTGTTGACACTGATTGGAACCTGTGCCGAGTCTAGGTCACTTGTGTATGAATATCTAAATAATGGCAGCCTTGAAGGTCACCTTGCCCGCAAAGAGAAGTCTCCACTTCCATGGCAAATTCGAATATCCGTTGCTGCTGACATATGTTCTGCTCTAATTTTTCTTCACTCTAGCGAGCCTAGTATTATACACGGGAATTTGAAAGCTAGCAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGCTGACATTGGCATTCATGGTTTAGTTGAGAAGAATGTGGATTCAGCTGACACAACAACAACACACAACAAACCAAATGAAAGTTTGGCATATGTTGATCCAGAGTATCTTGCCACTGGCAAATTCACTCCAGAATCGGATGTGTATTCATTCGGAATCCTGTTGTTGCAACTTCTAACCGGAAGACCACTTTTGGGGCTAGTCAGAGATGTCAAATGTGCATTGGAAAAGGATAACCTTGAAGCAGTATTGGACTTCTCAGCTGGTGAGTGGCCACTTGATCAAACTATACATCTGGCCTATTTAGCATTGAGATGTTGTGACAAGACTTGGCTGAACCGGCCGGACCTCACATCAGATATTTGGGATGTTCTTGAACCATTCAGAACTACATGCATGAACATGCCGCCATATTTGACATCCAAGAAACATCGCCGCACTCCATCCCACTTTGTATGCCCCATTGTGCAGGAGGTAATGGAAGATCCGTACATAGCTGCAGATGGCTTTACGTATGAAGCCGAGGCAATAAGAGAATGGTTGGATAGTGGTCACGACACTTCCCCCATGACAAACCTCAAGCTTGAGCACACAAATTTAGTGCCTAATTATGCATTACATAATGCAATTCAAGAGTGGCAGCAACTACAGTGA 2367 0.414 MGSIQXAEAEEQDTHTVFVAVGNNIHKTQQLLHWASHNFPSKSICLLHVHHPHPIDSSPDRNPYRDETRSHSFLDNESKKIHELLDQYVATLVQTGVRAHKLLIEMDNIEKGIMEAIAQHNIRLLVIGAAADRYNLGKLAEQESTKIIPVHKQAVPSCNIWFICNGNIKCTRVDSKRTPEIETAPPLLVHNSNAEAEQSQKFEYESIPNGLEHLDSDDVEEIETVSSHSSLRSKWSSISVADSSKLSGLLFCEEEVDGEIEDKSEINGRLEESTRDSKSMRRKEFEEALKQWKVKESSLEDEALEMESLCAKEKNKRREVEEQLAREKEELQKTKNQQDEIMYELQTVQEQNSALANQLCETQEAAKELEEKILSAVDLLISFKEKRDRLQIECANAVRQVRVLREFGKSHTSFSYAVEFPVFSFMEINQATNDFDPSWKIGEGRYGSVYKGVLRNMHVAIKMLPSYGCHSQLEFERQVAVLSRVRHRNLLTLIGTCAESRSLVYEYLNNGSLEGHLARKEKSPLPWQIRISVAADICSALIFLHSSEPSIIHGNLKASKVLLDANFVAKLADIGIHGLVEKNVDSADTTTTHNKPNESLAYVDPEYLATGKFTPESDVYSFGILLLQLLTGRPLLGLVRDVKCALEKDNLEAVLDFSAGEWPLDQTIHLAYLALRCCDKTWLNRPDLTSDIWDVLEPFRTTCMNMPPYLTSKKHRRTPSHFVCPIVQEVMEDPYIAADGFTYEAEAIREWLDSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQLQ* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2816 788 Gene3D HUPs 15 142 IPR014729 -
Amo09g2816 788 Coils Coil 282 351 - -
Amo09g2816 788 Gene3D Transferase(Phosphotransferase) domain 1 508 703 - -
Amo09g2816 788 SUPERFAMILY Protein kinase-like (PK-like) 411 696 IPR011009 -
Amo09g2816 788 ProSiteProfiles U-box domain profile. 717 788 IPR003613 GO:0004842|GO:0016567
Amo09g2816 788 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 129 - -
Amo09g2816 788 CDD STK_N 16 166 - -
Amo09g2816 788 MobiDBLite consensus disorder prediction 53 71 - -
Amo09g2816 788 Pfam U-box domain 719 785 IPR003613 GO:0004842|GO:0016567
Amo09g2816 788 PANTHER OS02G0152300 PROTEIN 11 787 - -
Amo09g2816 788 SMART Ubox_2 721 784 IPR003613 GO:0004842|GO:0016567
Amo09g2816 788 Coils Coil 380 400 - -
Amo09g2816 788 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 11 787 - -
Amo09g2816 788 Pfam Protein tyrosine and serine/threonine kinase 440 687 IPR001245 GO:0004672|GO:0006468
Amo09g2816 788 ProSitePatterns Protein kinases ATP-binding region signature. 441 462 IPR017441 GO:0005524
Amo09g2816 788 CDD RING-Ubox_WDSUB1_like 722 763 - -
Amo09g2816 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 788 IPR013083 -
Amo09g2816 788 MobiDBLite consensus disorder prediction 50 71 - -
Amo09g2816 788 SUPERFAMILY RING/U-box 716 785 - -
Amo09g2816 788 Gene3D Phosphorylase Kinase; domain 1 408 507 - -
Amo09g2816 788 ProSiteProfiles Protein kinase domain profile. 435 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2816 Amo-Chr9 107207509 107212940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2816 77 785 U-box Gene Family AT3G49060 44.912 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo09g2816 PK_Tyr_Ser-Thr 8.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2816 - - aprc:113871315 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4427 19 161326321 161331583 Amo09g2816 09 107207509 107212940 hybridization